View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_low_7 (Length: 579)
Name: NF18947_low_7
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 538; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 10 - 563
Target Start/End: Original strand, 43411974 - 43412527
Alignment:
| Q |
10 |
aagaatatgcatgacatttcaaccgaggaagatgatacatcttttgtactacatggcaataggaattgtgagattgtcgacgcagacagcgaagagattg |
109 |
Q |
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| T |
43411974 |
aagaaaatgcatgacatttcaaccgaggaagatgatacatcttttgtactacatggcaataggaattgtgagattgtcgatgcagacagcgaagagattg |
43412073 |
T |
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| Q |
110 |
tagaagaaaatattgaagagattgtacaaattgagaaggatgtcaagaaagtacacgacattccatttgaggaaagcaatacatcttttgtactaaaagg |
209 |
Q |
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| T |
43412074 |
tagaagaaaatattgaagagattgtacaaattgagaaggatgtcaagaaagtacacgacattccatttgaggaaagcaatacatcttttgtactaaaagg |
43412173 |
T |
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| Q |
210 |
aaatagtaacagtgagattgtagatgcagatagagaagagatcatagaagcagatattggagagattgtacaaattgaaaagaatgtaaagaaagtaaat |
309 |
Q |
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| T |
43412174 |
aaatagtaacagtgagattgtagatgcagatagagaagagatcatagaagcagatattggagagattgtacaaattgaaaagaatgtaaagaaagtaaat |
43412273 |
T |
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| Q |
310 |
gacatttcagttgaggaagttgatacatctattgtgctaaagggccataagaattgtgagattgtcgacgcaaatagtgaagagaccgtagaagcaaata |
409 |
Q |
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| T |
43412274 |
gacatttcagttgaggaagttgatacatctattgtgctaaagggccataagaattgtgagattgtcgacgcaaatagtgaagagaccgtggaagcaaata |
43412373 |
T |
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| Q |
410 |
ttgaagatatggtacaaattgaaaaggatgtgaataaagaacatgacatttcaattgaatatgataatatacgaggtgtattgaagagaaagagtaatgt |
509 |
Q |
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| T |
43412374 |
ttgaagatatggtacaaattgaaaaggatgcgaataaagaacatgacatttcaattgaatatgataatatacgaggtgtattgaagagaaagagtaatgt |
43412473 |
T |
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| Q |
510 |
atatatcagctcaaatgtaaaacaggctttagaaacattagaaagggctatttc |
563 |
Q |
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| T |
43412474 |
atatatcagctcaaatgtaaaacaggctttagaaacattagaaagggctatttc |
43412527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 270 - 459
Target Start/End: Original strand, 43411946 - 43412135
Alignment:
| Q |
270 |
agagattgtacaaattgaaaagaatgtaaagaaagtaaatgacatttcagttgaggaagttgatacatctattgtgctaaagggccataagaattgtgag |
369 |
Q |
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| T |
43411946 |
agagattgtacaaagtgagaaggatttcaagaaaatgcatgacatttcaaccgaggaagatgatacatcttttgtactacatggcaataggaattgtgag |
43412045 |
T |
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| Q |
370 |
attgtcgacgcaaatagtgaagagaccgtagaagcaaatattgaagatatggtacaaattgaaaaggatgtgaataaagaacatgacatt |
459 |
Q |
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| T |
43412046 |
attgtcgatgcagacagcgaagagattgtagaagaaaatattgaagagattgtacaaattgagaaggatgtcaagaaagtacacgacatt |
43412135 |
T |
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