View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_low_75 (Length: 229)
Name: NF18947_low_75
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_low_75 |
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| [»] chr4 (10 HSPs) |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 11468422 - 11468640
Alignment:
| Q |
11 |
cagagaacatggatgaagaattcccttaacaagtggtgcaaaacaagttgattcaccattgatgagaagctttgaaggaggtgtgagagcataagctgtt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11468422 |
cagagaacatggatgaagaattcccttaacaagtggtgcaaaacaagttgattcaccattgatgagaagctttgaaggaggtgtgagagcataagctgtt |
11468521 |
T |
|
| Q |
111 |
tcttctttcactgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11468522 |
tcttctttcactgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatg |
11468621 |
T |
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| Q |
211 |
aggctaattcaggaacagt |
229 |
Q |
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||||||||||||||||||| |
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| T |
11468622 |
aggctaattcaggaacagt |
11468640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 11523039 - 11522821
Alignment:
| Q |
11 |
cagagaacatggatgaagaattcccttaacaagtggtgcaaaacaagttgattcaccattgatgagaagctttgaaggaggtgtgagagcataagctgtt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11523039 |
cagagaacatggatgaagaattcccttaacaagtggtgcaaaacaagttgattcaccattgatgagaagctttgaaggaggtgtgagagcataagctgtt |
11522940 |
T |
|
| Q |
111 |
tcttctttcactgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11522939 |
tcttctttcactgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatg |
11522840 |
T |
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| Q |
211 |
aggctaattcaggaacagt |
229 |
Q |
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||||||||||||||||||| |
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| T |
11522839 |
aggctaattcaggaacagt |
11522821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 11507298 - 11507198
Alignment:
| Q |
122 |
tgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggctaattca |
221 |
Q |
| |
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||||||||| || |||||||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
11507298 |
tgttgttttcgcaaagaaaccattgtgtgttagcaagcgcaagagacgataaaggacactaactttagaagggtggagtttcaaagatgaagctaattca |
11507199 |
T |
|
| Q |
222 |
g |
222 |
Q |
| |
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| |
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|
| T |
11507198 |
g |
11507198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 11445561 - 11445661
Alignment:
| Q |
122 |
tgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggctaattca |
221 |
Q |
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|||||||||||| |||||||||| ||||||||||| |||||||| | ||| |||||||||||||| ||||| || |||||||||||||| ||||||||| |
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| T |
11445561 |
tgttgtttttgcaaagaaaccattgtgtgttagcaggcgcaagagacgatacaggacactaactttcgaaggatggagtttcaaagatgaagctaattca |
11445660 |
T |
|
| Q |
222 |
g |
222 |
Q |
| |
|
| |
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| T |
11445661 |
g |
11445661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 11547529 - 11547429
Alignment:
| Q |
122 |
tgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggctaattca |
221 |
Q |
| |
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|||||||||||| |||||||||| ||||||||||| |||||||| | ||| |||||||||||||| ||||| || |||||||||||||| ||||||||| |
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| T |
11547529 |
tgttgtttttgcaaagaaaccattgtgtgttagcaggcgcaagagacgatacaggacactaactttcgaaggatggagtttcaaagatgaagctaattca |
11547430 |
T |
|
| Q |
222 |
g |
222 |
Q |
| |
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| |
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| T |
11547429 |
g |
11547429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 222
Target Start/End: Complemental strand, 34784116 - 34784010
Alignment:
| Q |
116 |
tttcactgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggct |
215 |
Q |
| |
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||||||||||||||||| ||||| |||| |||||||| | ||| ||||| | ||| |||| |||||||||||||||| ||||| |||||||||||| |
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| T |
34784116 |
tttcactgttgtttttgtaaagaagccattgtgtgttaaaaggcgtaagaatcgatagaggatgttaactttagaagggtggagttttaaagatgaggct |
34784017 |
T |
|
| Q |
216 |
aattcag |
222 |
Q |
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||||||| |
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| T |
34784016 |
aattcag |
34784010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 34775896 - 34775789
Alignment:
| Q |
115 |
ctttcactgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggc |
214 |
Q |
| |
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|||||||| |||||||||| |||||||||| ||||||| | ||| ||||| | | || | | |||||||||||||||||||||||||||||||||| |
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| T |
34775896 |
ctttcactattgtttttgcaaagaaaccattatgtgttaaaaggcgtaagaatcggtgaagtatattaactttagaagggtgaagtttcaaagatgaggc |
34775797 |
T |
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| Q |
215 |
taattcag |
222 |
Q |
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|| ||||| |
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| T |
34775796 |
tagttcag |
34775789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 34775960 - 34775915
Alignment:
| Q |
72 |
atgagaagctttgaaggaggtgtgagagcataagctgtttcttctt |
117 |
Q |
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|||||||||||||||||||||||||||| ||| ||| ||||||||| |
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| T |
34775960 |
atgagaagctttgaaggaggtgtgagagaatatgctatttcttctt |
34775915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 11445438 - 11445538
Alignment:
| Q |
17 |
acatggatgaagaattcccttaacaagtggtgcaaaacaagttgattcaccattgatgagaagctttgaaggaggtgtgagagcataagctgtttcttct |
116 |
Q |
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|||||||||||| | ||| |||||| ||||| ||||| ||||||| ||| | ||||||||| |||||||||| ||||||| ||| | |||||||||| |
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| T |
11445438 |
acatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcattgaaggaggagtgagagaatatgttgtttcttct |
11445537 |
T |
|
| Q |
117 |
t |
117 |
Q |
| |
|
| |
|
|
| T |
11445538 |
t |
11445538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 11547652 - 11547552
Alignment:
| Q |
17 |
acatggatgaagaattcccttaacaagtggtgcaaaacaagttgattcaccattgatgagaagctttgaaggaggtgtgagagcataagctgtttcttct |
116 |
Q |
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|||||||||||| | ||| |||||| ||||| ||||| ||||||| ||| | ||||||||| |||||||||| ||||||| ||| | |||||||||| |
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| T |
11547652 |
acatggatgaagcactccgctaacaaatggtgacaaacatgttgatttgccacttatgagaagcattgaaggaggagtgagagaatatgttgtttcttct |
11547553 |
T |
|
| Q |
117 |
t |
117 |
Q |
| |
|
| |
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| T |
11547552 |
t |
11547552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 1955 - 1855
Alignment:
| Q |
122 |
tgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggctaattca |
221 |
Q |
| |
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||||||||| || |||||||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
1955 |
tgttgttttcgcaaagaaaccattgtgtgttagcaagcgcaagagacgataaaggacactaactttagaagggtggagtttcaaagatgaagctaattca |
1856 |
T |
|
| Q |
222 |
g |
222 |
Q |
| |
|
| |
|
|
| T |
1855 |
g |
1855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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