View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_low_9 (Length: 549)
Name: NF18947_low_9
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 13 - 523
Target Start/End: Complemental strand, 48557135 - 48556625
Alignment:
| Q |
13 |
aatattactccattgatggacaaaggggtaattgttaaataatattaatagtttatttcatgaatttagtgtacatgttcgtcttaacttcaaacactgg |
112 |
Q |
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| T |
48557135 |
aatattactccattgatggccaaaggggtaattgttaaataatattagtagtttatttcatgaatttagtgtacatgttcgtcttaactgcaaacactgg |
48557036 |
T |
|
| Q |
113 |
tgttcttgtaagtgtgatcagcatcatgaagtgtctacattcaatgtcacattgctcttctatagatagcaggacttgcgataaggtagataatttccat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48557035 |
tgttcttgtaagtgtgatcagcatcatgaagtgtctacattcaatgtcacattgctcttctatagatagcaggacttgcgataaggtagataatttccat |
48556936 |
T |
|
| Q |
213 |
tcaagagaatctagacaaaaatgatactagtaagagactactagcatttctttttgagagaaagagagtaaagagagtctgtttttgtcatagtttagtc |
312 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48556935 |
tcaagagaatcaagacaaaaatgatactagtaagagactactagcatttctttttgagagaaagagagtaaagagagtctgtttttgtcatagtttagtc |
48556836 |
T |
|
| Q |
313 |
gtattgtatatcatctcacttgtcttacatcaacagagttattgtaatcttatccttggcgtactagattttgtggatttccctcttacattgattgaga |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48556835 |
gtattgtatatcatctcacttgtcttacatcaacagagttattgtaatcttatccttggcgtactagattttgtggatttccctcttacattgattgaga |
48556736 |
T |
|
| Q |
413 |
ggcttttcacggtaaatttgcgatgtaattttagtctatcattttgcttctctgcttaatgtgtatttgaaattttaagaggatggaaattctgctgtat |
512 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48556735 |
ggcttttcactgtaaatttgcgatgtaattttagtctatcattttgcttctctgcttaatgtgtatttgaaattttaagaggatggaaattctgctgtat |
48556636 |
T |
|
| Q |
513 |
ttctcaatagt |
523 |
Q |
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||||||||||| |
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| T |
48556635 |
ttctcaatagt |
48556625 |
T |
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