View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18948_high_11 (Length: 420)
Name: NF18948_high_11
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18948_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 22 - 402
Target Start/End: Complemental strand, 31224459 - 31224069
Alignment:
| Q |
22 |
gataagtcaaacttcatcattctatttaaatttcgaagttaagaagnnnnnnnnnn-------gacacaaggtaaggaactcttcatatcaataaaaagt |
114 |
Q |
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| T |
31224459 |
gataagtcaaacttcatcattctatttaaatttcgaagttaagaagtttttttttttttttttgacacaaggtaaggaactcttgatatcaacaaaaagt |
31224360 |
T |
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| Q |
115 |
tgttttaataaatttattgttgattgaaaaagattttgcattaatttgaaaatgtctacattaat----agtacacacctataagtggatggatttgaag |
210 |
Q |
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| T |
31224359 |
tgttttaataaatttattgttgattgaaaa-gatttggcattaatttgaaaatgtctacattaattaatagtacacacctataagtggatggatttgaag |
31224261 |
T |
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| Q |
211 |
gccacatatgaatccaatctgctattggatgagagtaatgtttgatgaaatctctccagcaaaaaacttcatccttggcttgattaagactagttccata |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31224260 |
gccacatatgaatccaatctgctattggatgagagtaatgtttgatgaaatctctccagcaaaaaacttcatccttggcttgattaagacttgttccata |
31224161 |
T |
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| Q |
311 |
tcttacaggattgtgaacatcatcagaaaataagcgcattttttcatcattagggaggttgaagaattctgttgcaacttgtagagcatctt |
402 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31224160 |
tcttacaggtttgtgaacatcatcagaaaataagcgcattttttcatcattagggaggttgaagaattctgttgcaacttgtagagcatctt |
31224069 |
T |
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