View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18948_high_14 (Length: 392)

Name: NF18948_high_14
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18948_high_14
NF18948_high_14
[»] chr7 (13 HSPs)
chr7 (113-227)||(44547312-44547427)
chr7 (1-114)||(44547723-44547836)
chr7 (228-283)||(24825880-24825935)
chr7 (228-283)||(37873417-37873472)
chr7 (228-283)||(24825559-24825614)
chr7 (228-283)||(32792783-32792838)
chr7 (228-283)||(32793103-32793158)
chr7 (218-283)||(37879170-37879235)
chr7 (231-283)||(9402563-9402615)
chr7 (228-283)||(11324368-11324423)
chr7 (231-280)||(11324056-11324105)
chr7 (348-380)||(11324271-11324303)
chr7 (348-380)||(32793006-32793038)
[»] chr3 (21 HSPs)
chr3 (45-111)||(2736837-2736903)
chr3 (147-227)||(2736918-2736999)
chr3 (221-283)||(33794427-33794489)
chr3 (228-279)||(20124655-20124706)
chr3 (228-283)||(40560779-40560834)
chr3 (228-283)||(5048004-5048059)
chr3 (228-281)||(2439770-2439823)
chr3 (228-281)||(5048326-5048379)
chr3 (222-283)||(14783729-14783790)
chr3 (236-283)||(2440090-2440137)
chr3 (228-283)||(31724353-31724408)
chr3 (228-280)||(14784044-14784096)
chr3 (228-280)||(31724671-31724723)
chr3 (1-54)||(2733280-2733332)
chr3 (348-380)||(2439993-2440025)
chr3 (348-380)||(5048124-5048156)
chr3 (348-380)||(20124776-20124808)
chr3 (337-380)||(33794542-33794585)
chr3 (338-380)||(14783845-14783887)
chr3 (348-380)||(31724473-31724505)
chr3 (228-260)||(33794774-33794806)
[»] chr4 (20 HSPs)
chr4 (222-283)||(23254697-23254758)
chr4 (228-283)||(38484461-38484516)
chr4 (228-283)||(41315899-41315954)
chr4 (228-283)||(41316218-41316273)
chr4 (228-283)||(55893491-55893546)
chr4 (229-283)||(15874229-15874283)
chr4 (228-281)||(42305905-42305958)
chr4 (228-283)||(23254377-23254432)
chr4 (228-283)||(42306224-42306279)
chr4 (228-280)||(38485191-38485243)
chr4 (228-279)||(15874552-15874603)
chr4 (228-283)||(20878693-20878748)
chr4 (228-278)||(55893214-55893264)
chr4 (339-380)||(55893322-55893363)
chr4 (228-272)||(20878988-20879032)
chr4 (337-380)||(20878802-20878845)
chr4 (337-380)||(41316008-41316051)
chr4 (340-380)||(23254600-23254640)
chr4 (348-380)||(38484582-38484614)
chr4 (348-380)||(42306024-42306056)
[»] scaffold0291 (2 HSPs)
scaffold0291 (228-283)||(11375-11430)
scaffold0291 (228-283)||(10954-11009)
[»] chr8 (6 HSPs)
chr8 (228-283)||(3068774-3068829)
chr8 (228-283)||(3069094-3069149)
chr8 (228-283)||(3305619-3305674)
chr8 (228-275)||(3305947-3305994)
chr8 (337-380)||(3305842-3305885)
chr8 (348-380)||(3068894-3068926)
[»] chr5 (9 HSPs)
chr5 (228-283)||(39760424-39760479)
chr5 (228-283)||(31155662-31155717)
chr5 (223-283)||(31156213-31156273)
chr5 (228-283)||(39761634-39761689)
chr5 (228-283)||(31155370-31155425)
chr5 (228-283)||(31155893-31155948)
chr5 (348-380)||(31155565-31155597)
chr5 (337-377)||(31156002-31156042)
chr5 (337-377)||(39761540-39761580)
[»] chr2 (8 HSPs)
chr2 (228-283)||(4732003-4732058)
chr2 (228-283)||(4731715-4731770)
chr2 (228-275)||(12414165-12414212)
chr2 (228-275)||(12426225-12426272)
chr2 (228-280)||(12413838-12413890)
chr2 (228-280)||(12425898-12425950)
chr2 (348-380)||(12414060-12414092)
chr2 (348-380)||(12426120-12426152)
[»] chr1 (13 HSPs)
chr1 (228-283)||(7710022-7710077)
chr1 (228-283)||(52331407-52331462)
chr1 (229-283)||(13618604-13618658)
chr1 (228-283)||(7709700-7709755)
chr1 (228-283)||(34492549-34492604)
chr1 (228-283)||(52331727-52331782)
chr1 (229-283)||(13618421-13618475)
chr1 (228-280)||(34492237-34492289)
chr1 (228-280)||(13618256-13618308)
chr1 (337-380)||(7709925-7709968)
chr1 (337-380)||(34492452-34492495)
chr1 (337-380)||(37646880-37646923)
chr1 (228-283)||(37646977-37647032)
[»] scaffold0184 (2 HSPs)
scaffold0184 (228-282)||(7018-7072)
scaffold0184 (228-283)||(7273-7328)
[»] scaffold1408 (1 HSPs)
scaffold1408 (229-282)||(1745-1798)
[»] scaffold0428 (3 HSPs)
scaffold0428 (229-282)||(7491-7544)
scaffold0428 (229-283)||(7795-7849)
scaffold0428 (337-380)||(7599-7642)
[»] scaffold0032 (1 HSPs)
scaffold0032 (231-283)||(33236-33288)
[»] chr6 (13 HSPs)
chr6 (228-280)||(16368923-16368975)
chr6 (228-279)||(29847003-29847054)
chr6 (230-283)||(20582638-20582691)
chr6 (228-280)||(33746712-33746764)
chr6 (228-279)||(6851249-6851300)
chr6 (228-283)||(16766580-16766635)
chr6 (228-283)||(33746971-33747026)
chr6 (228-279)||(16766289-16766340)
chr6 (228-280)||(16368641-16368693)
chr6 (228-280)||(29846789-29846841)
chr6 (228-283)||(11242292-11242347)
chr6 (228-283)||(11246371-11246426)
chr6 (337-380)||(33746821-33746864)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 6e-47; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 113 - 227
Target Start/End: Complemental strand, 44547427 - 44547312
Alignment:
Q  113 tatatattaaaaagtagtcaggtattttttccatttaaaattgaagatcaatgagtcactttttgtcccatcacagtaacatcttaaacaaactaatag- 211  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  44547427 tatatattaaaaagtagtcatgtattttttccatttaaaattaaagatcaatgagtcactttttgtcccatcacattaacatcttaaacaaactaatagt 44547328  T
Q  212 tgttacatttaaaatc 227  Q
    ||||||||||||||||    
T  44547327 tgttacatttaaaatc 44547312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 44547836 - 44547723
Alignment:
Q  1 gcttagagcaaaagatgatcataatactgagaatatgttcctgaaagttatccaaccaaagttaaacaatcaccacactctacttcctcattatatatac 100  Q
    |||||||||||||| ||||||||||| || ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44547836 gcttagagcaaaaggtgatcataatattgtgaatatgttcctgaaagttgtccaaccaaagttgaacaatcaccacactctacttcctcattatatatac 44547737  T
Q  101 ttgtctactaacta 114  Q
    ||||||||||||||    
T  44547736 ttgtctactaacta 44547723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 24825935 - 24825880
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  24825935 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttg 24825880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 37873417 - 37873472
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  37873417 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttg 37873472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 24825559 - 24825614
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||    
T  24825559 ggcttaaatattgcactcgtccctgcaaatatggctcgtttaagttttggtccttg 24825614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 32792783 - 32792838
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    |||||||||||||||||||||| || |||||||| |||||||||||||||||||||    
T  32792783 ggcttaaatattgcactcgtccttgcaaatatggcccgtttaagttttggtccttg 32792838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 32793158 - 32793103
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||||||||||||| |||||| | |||||||||||||||||||||    
T  32793158 ggcttaaatattgcactcgtccctgcaaatatagcccgtttaagttttggtccttg 32793103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 37879235 - 37879170
Alignment:
Q  218 atttaaaatcggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    |||||| || ||||||||||||| ||||||||||| |||||||  |||||||||||||||||||||    
T  37879235 atttaatataggcttaaatattgtactcgtccctgcaaatatgacccgtttaagttttggtccttg 37879170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 9402563 - 9402615
Alignment:
Q  231 ttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    |||||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  9402563 ttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttg 9402615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 11324423 - 11324368
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||| ||||||||| ||||||||  ||||||||||||||||||||    
T  11324423 ggcttaaatattgcattcgtccctgcaaatatggctcgtttaagttttggtccttg 11324368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 280
Target Start/End: Original strand, 11324056 - 11324105
Alignment:
Q  231 ttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 280  Q
    |||||||||||||||||||||| |||||||| ||| ||||||||| ||||    
T  11324056 ttaaatattgcactcgtccctgcaaatatggcccgattaagttttcgtcc 11324105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 380
Target Start/End: Complemental strand, 11324303 - 11324271
Alignment:
Q  348 catttaagtaatgacaagtcaccaaaatgccta 380  Q
    ||||||||| |||||||||||||||||||||||    
T  11324303 catttaagtcatgacaagtcaccaaaatgccta 11324271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 380
Target Start/End: Complemental strand, 32793038 - 32793006
Alignment:
Q  348 catttaagtaatgacaagtcaccaaaatgccta 380  Q
    ||||||||| |||||||||||||||||||||||    
T  32793038 catttaagtcatgacaagtcaccaaaatgccta 32793006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 2736837 - 2736903
Alignment:
Q  45 aagttatccaaccaaagttaaacaatcaccacactctacttcctcattatatatacttgtctactaa 111  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  2736837 aagttatccaaccaaagttgaacaatcaccacactctacttcctcattatatatacgtgtctactaa 2736903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 2736918 - 2736999
Alignment:
Q  147 ttaaaattgaagatcaatgagtcactttttgtcccatcacagtaacatcttaaacaaactaatag-tgttacatttaaaatc 227  Q
    |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  2736918 ttaaaatttaagataaatgagtcactttttgtcccatcacattaacatcttaaacaaagtaatagttgttacatttaaaatc 2736999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 33794427 - 33794489
Alignment:
Q  221 taaaatcggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33794427 taaaataggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttg 33794489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 20124655 - 20124706
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtc 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20124655 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtc 20124706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 40560834 - 40560779
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40560834 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttg 40560779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 5048004 - 5048059
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  5048004 ggcttaaatattgcactcgtccttgtaaatatggtccgtttaagttttggttcttg 5048059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 2439770 - 2439823
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcct 281  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  2439770 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtcct 2439823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 5048379 - 5048326
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcct 281  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  5048379 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtcct 5048326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 14783729 - 14783790
Alignment:
Q  222 aaaatcggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||| ||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||    
T  14783729 aaaataggcttaaatattgcacttgtccctgcaaatatggcccgtttaagttttggtccttg 14783790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 2440137 - 2440090
Alignment:
Q  236 tattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  2440137 tattgcactcgtccttgtaaatatggtccgtttaagttttggttcttg 2440090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 31724353 - 31724408
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    |||||||||||||||||||||| || |||||||| |||||||| ||||||||||||    
T  31724353 ggcttaaatattgcactcgtccatgcaaatatggcccgtttaaattttggtccttg 31724408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 14784096 - 14784044
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 280  Q
    ||||||||||||||||||||||||| |||||||  ||||||||||||| ||||    
T  14784096 ggcttaaatattgcactcgtccctgcaaatatgacccgtttaagttttcgtcc 14784044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 31724723 - 31724671
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 280  Q
    |||||||||||||||||||||| || |||||||| ||||||||||||| ||||    
T  31724723 ggcttaaatattgcactcgtccttgcaaatatggcccgtttaagtttttgtcc 31724671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2733280 - 2733332
Alignment:
Q  1 gcttagagcaaaagatgatcataatactgagaatatgttcctgaaagttatcca 54  Q
    |||||||||||| | ||||||||||| || ||||||||||||||||||||||||    
T  2733280 gcttagagcaaagg-tgatcataatattgtgaatatgttcctgaaagttatcca 2733332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 380
Target Start/End: Complemental strand, 2440025 - 2439993
Alignment:
Q  348 catttaagtaatgacaagtcaccaaaatgccta 380  Q
    |||||||||||||||||||||||||||||||||    
T  2440025 catttaagtaatgacaagtcaccaaaatgccta 2439993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 380
Target Start/End: Original strand, 5048124 - 5048156
Alignment:
Q  348 catttaagtaatgacaagtcaccaaaatgccta 380  Q
    |||||||||||||||||||||||||||||||||    
T  5048124 catttaagtaatgacaagtcaccaaaatgccta 5048156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 380
Target Start/End: Original strand, 20124776 - 20124808
Alignment:
Q  348 catttaagtaatgacaagtcaccaaaatgccta 380  Q
    |||||||||||||||||||||||||||||||||    
T  20124776 catttaagtaatgacaagtcaccaaaatgccta 20124808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 33794542 - 33794585
Alignment:
Q  337 acccctgagctcatttaagtaatgacaagtcaccaaaatgccta 380  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  33794542 acccctgggcccatttaagtcatgacaagtcaccaaaatgccta 33794585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 14783845 - 14783887
Alignment:
Q  338 cccctgagctcatttaagtaatgacaagtcaccaaaatgccta 380  Q
    |||||| || ||||||||| |||||||||||||||||||||||    
T  14783845 cccctgggcccatttaagtcatgacaagtcaccaaaatgccta 14783887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 380
Target Start/End: Original strand, 31724473 - 31724505
Alignment:
Q  348 catttaagtaatgacaagtcaccaaaatgccta 380  Q
    ||||||||| |||||||||||||||||||||||    
T  31724473 catttaagtcatgacaagtcaccaaaatgccta 31724505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 260
Target Start/End: Complemental strand, 33794806 - 33794774
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatg 260  Q
    ||||||||||||||||||||||||| |||||||    
T  33794806 ggcttaaatattgcactcgtccctgcaaatatg 33794774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 23254758 - 23254697
Alignment:
Q  222 aaaatcggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23254758 aaaataggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttg 23254697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 38484461 - 38484516
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  38484461 ggcttaaatattgcactcgtctctgtaaatatggcccgtttaagttttggtccttg 38484516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 41315899 - 41315954
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  41315899 ggcttaaatattgcattcgtccctgcaaatatggtccgtttaagttttggtccttg 41315954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 41316273 - 41316218
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  41316273 ggcttaaatattgcactcgtccctgcaaatatggttcgtttaagttttggtccttg 41316218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 55893546 - 55893491
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  55893546 ggcttaaatattgcactcgtccctgtaaatatggctcgtttaagttttggtccttg 55893491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 15874229 - 15874283
Alignment:
Q  229 gcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  15874229 gcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttg 15874283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 42305905 - 42305958
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcct 281  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  42305905 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtcct 42305958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 23254377 - 23254432
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  23254377 ggcttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttg 23254432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 42306279 - 42306224
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||| ||||||||||  |||||||| |||||||||||||||||||||    
T  42306279 ggcttaaatattgaactcgtccctccaaatatggcccgtttaagttttggtccttg 42306224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 38485243 - 38485191
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 280  Q
    ||||||||||||||||||||||||| |||||||  ||||||||||||| ||||    
T  38485243 ggcttaaatattgcactcgtccctgcaaatatgacccgtttaagttttcgtcc 38485191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 15874603 - 15874552
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtc 279  Q
    ||||||| ||||||||||||||||| |||||||  |||||||||||||||||    
T  15874603 ggcttaagtattgcactcgtccctgcaaatatgccccgtttaagttttggtc 15874552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 20878693 - 20878748
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    |||||||| ||| ||||| |||||| |||||||| |||||||||||||||||||||    
T  20878693 ggcttaaacattccactcatccctgcaaatatggcccgtttaagttttggtccttg 20878748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 55893214 - 55893264
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggt 278  Q
    |||||||||||||||| |||| ||| |||||||| ||||||||||||||||    
T  55893214 ggcttaaatattgcacccgtctctgcaaatatggcccgtttaagttttggt 55893264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 380
Target Start/End: Original strand, 55893322 - 55893363
Alignment:
Q  339 ccctgagctcatttaagtaatgacaagtcaccaaaatgccta 380  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  55893322 ccctgggctcatttaagtcatgacaagtcaccaaaatgccta 55893363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 20879032 - 20878988
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagt 272  Q
    |||||||||||| |||||||||||| |||||||| ||||||||||    
T  20879032 ggcttaaatattacactcgtccctgcaaatatggcccgtttaagt 20878988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 20878802 - 20878845
Alignment:
Q  337 acccctgagctcatttaagtaatgacaagtcaccaaaatgccta 380  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  20878802 acccctgggcccatttaagtcatgacaagtcaccaaaatgccta 20878845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 41316008 - 41316051
Alignment:
Q  337 acccctgagctcatttaagtaatgacaagtcaccaaaatgccta 380  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  41316008 acccctgggcccatttaagtcatgacaagtcaccaaaatgccta 41316051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 340 - 380
Target Start/End: Complemental strand, 23254640 - 23254600
Alignment:
Q  340 cctgagctcatttaagtaatgacaagtcaccaaaatgccta 380  Q
    |||| |||||||||||| |||||||||||||||||| ||||    
T  23254640 cctgggctcatttaagtcatgacaagtcaccaaaataccta 23254600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 380
Target Start/End: Original strand, 38484582 - 38484614
Alignment:
Q  348 catttaagtaatgacaagtcaccaaaatgccta 380  Q
    ||||||||| |||||||||||||||||||||||    
T  38484582 catttaagtcatgacaagtcaccaaaatgccta 38484614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 380
Target Start/End: Original strand, 42306024 - 42306056
Alignment:
Q  348 catttaagtaatgacaagtcaccaaaatgccta 380  Q
    ||||||||| |||||||||||||||||||||||    
T  42306024 catttaagtcatgacaagtcaccaaaatgccta 42306056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 11430 - 11375
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11430 ggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttg 11375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 10954 - 11009
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||    
T  10954 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaaattttggtccttg 11009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 3068774 - 3068829
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3068774 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttg 3068829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 3069149 - 3069094
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3069149 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttg 3069094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 3305619 - 3305674
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  3305619 ggcttaaatattgaactcgtccctgcaaatatggtccgtttaagttttggtccttg 3305674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 3305994 - 3305947
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagtttt 275  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||    
T  3305994 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagtttt 3305947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 380
Target Start/End: Complemental strand, 3305885 - 3305842
Alignment:
Q  337 acccctgagctcatttaagtaatgacaagtcaccaaaatgccta 380  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  3305885 acccctgtgcccatttaagtcatgacaagtcaccaaaatgccta 3305842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 380
Target Start/End: Original strand, 3068894 - 3068926
Alignment:
Q  348 catttaagtaatgacaagtcaccaaaatgccta 380  Q
    ||||||||| |||||||||||||||||||||||    
T  3068894 catttaagtcatgacaagtcaccaaaatgccta 3068926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 39760424 - 39760479
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39760424 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttg 39760479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 31155717 - 31155662
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  31155717 ggcttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttg 31155662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 31156273 - 31156213
Alignment:
Q  223 aaatcggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    |||| ||||||||||||||| ||||||||  ||||||||||||||||||||||||| ||||    
T  31156273 aaataggcttaaatattgcattcgtccctacaaatatggtccgtttaagttttggttcttg 31156213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 39761689 - 39761634
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||||| ||||||| ||||||||  ||||||||||||||||||||    
T  39761689 ggcttaaatattgcacttgtccctgcaaatatggcacgtttaagttttggtccttg 39761634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 31155370 - 31155425
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||| |||||||| || |||||||| |||||||| |||| |||||||    
T  31155370 ggcttaaatattgtactcgtccatgcaaatatggcccgtttaattttttgtccttg 31155425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 31155893 - 31155948
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    |||||||||||||  |||||||||| |||||||   ||||||||||||||||||||    
T  31155893 ggcttaaatattgatctcgtccctgcaaatatgacacgtttaagttttggtccttg 31155948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 380
Target Start/End: Complemental strand, 31155597 - 31155565
Alignment:
Q  348 catttaagtaatgacaagtcaccaaaatgccta 380  Q
    ||||||||| |||||||||||||||||||||||    
T  31155597 catttaagtcatgacaagtcaccaaaatgccta 31155565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 31156002 - 31156042
Alignment:
Q  337 acccctgagctcatttaagtaatgacaagtcaccaaaatgc 377  Q
    ||||||| || ||||||||| ||||||||||||||||||||    
T  31156002 acccctgggcccatttaagttatgacaagtcaccaaaatgc 31156042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 39761580 - 39761540
Alignment:
Q  337 acccctgagctcatttaagtaatgacaagtcaccaaaatgc 377  Q
    ||||||| || ||||||||| ||||||||||||||||||||    
T  39761580 acccctgggcccatttaagtcatgacaagtcaccaaaatgc 39761540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 4732058 - 4732003
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  4732058 ggcttaaatattgcactcatccctgcaaatatggtccgtttaagttttggtccttg 4732003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 4731715 - 4731770
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||    
T  4731715 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagatttggtccttg 4731770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 12414212 - 12414165
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagtttt 275  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12414212 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagtttt 12414165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 12426272 - 12426225
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagtttt 275  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12426272 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagtttt 12426225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 12413838 - 12413890
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 280  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||||||| ||||    
T  12413838 ggcttaaatattgcacttgtccctgcaaatatggcccgtttaagttttcgtcc 12413890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 12425898 - 12425950
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 280  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||||||| ||||    
T  12425898 ggcttaaatattgcacttgtccctgcaaatatggcccgtttaagttttcgtcc 12425950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 380
Target Start/End: Complemental strand, 12414092 - 12414060
Alignment:
Q  348 catttaagtaatgacaagtcaccaaaatgccta 380  Q
    ||||||||| |||||||||||||||||||||||    
T  12414092 catttaagtcatgacaagtcaccaaaatgccta 12414060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 380
Target Start/End: Complemental strand, 12426152 - 12426120
Alignment:
Q  348 catttaagtaatgacaagtcaccaaaatgccta 380  Q
    ||||||||| |||||||||||||||||||||||    
T  12426152 catttaagtcatgacaagtcaccaaaatgccta 12426120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 7710077 - 7710022
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  7710077 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttg 7710022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 52331407 - 52331462
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  52331407 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttg 52331462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 13618658 - 13618604
Alignment:
Q  229 gcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  13618658 gcttaaatattgcattcgtccctgcaaatatggtccgtttaagttttggtccttg 13618604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 7709700 - 7709755
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||    
T  7709700 ggcttaaatattgaactcgtccctgcaaatatggcccgtttaagttttggtccttg 7709755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 34492604 - 34492549
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    |||||||||||||||||||| |||| |||||||||| |||||||||||||||||||    
T  34492604 ggcttaaatattgcactcgttcctgcaaatatggtctgtttaagttttggtccttg 34492549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 52331782 - 52331727
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||    
T  52331782 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttgatccttg 52331727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 13618475 - 13618421
Alignment:
Q  229 gcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    |||||||||||||| ||||||||| |||||||| |||||||||||||||||||||    
T  13618475 gcttaaatattgcattcgtccctgcaaatatggcccgtttaagttttggtccttg 13618421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 34492237 - 34492289
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 280  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||    
T  34492237 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttcgtcc 34492289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 13618256 - 13618308
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 280  Q
    |||||||||||||||||| |||||| |||||||  ||||||||||||| ||||    
T  13618256 ggcttaaatattgcactcttccctgcaaatatgacccgtttaagttttagtcc 13618308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 380
Target Start/End: Complemental strand, 7709968 - 7709925
Alignment:
Q  337 acccctgagctcatttaagtaatgacaagtcaccaaaatgccta 380  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  7709968 acccctgtgcccatttaagtcatgacaagtcaccaaaatgccta 7709925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 380
Target Start/End: Complemental strand, 34492495 - 34492452
Alignment:
Q  337 acccctgagctcatttaagtaatgacaagtcaccaaaatgccta 380  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  34492495 acccctgggcccatttaagtcatgacaagtcaccaaaatgccta 34492452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 380
Target Start/End: Complemental strand, 37646923 - 37646880
Alignment:
Q  337 acccctgagctcatttaagtaatgacaagtcaccaaaatgccta 380  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  37646923 acccctgggcccatttaagtcatgacaagtcaccaaaatgccta 37646880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 37647032 - 37646977
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||| ||||  ||| ||||||||  ||||||||||||||||||||    
T  37647032 ggcttaaatattgcattcgtttctgcaaatatggctcgtttaagttttggtccttg 37646977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 7018 - 7072
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcctt 282  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  7018 ggcttaaatattgcactcgttcctgcaaatatggtccgtttaagttttggtcctt 7072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 7328 - 7273
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||||||||||    
T  7328 ggcttaaatattggattcgtccctgcaaatatggcccgtttaagttttggtccttg 7273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 1745 - 1798
Alignment:
Q  229 gcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcctt 282  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  1745 gcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtcctt 1798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 7491 - 7544
Alignment:
Q  229 gcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcctt 282  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  7491 gcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtcctt 7544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 7849 - 7795
Alignment:
Q  229 gcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||||||||||||    
T  7849 gcttaaatattgcactcgtccctgcaaatatggcacgtttaagttttggtccttg 7795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 7599 - 7642
Alignment:
Q  337 acccctgagctcatttaagtaatgacaagtcaccaaaatgccta 380  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  7599 acccctgggcccatttaagtcatgacaagtcaccaaaatgccta 7642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 33288 - 33236
Alignment:
Q  231 ttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  33288 ttaaatattgcactcgtccctgcaaatatggtccgtttatgttttggtccttg 33236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 16368975 - 16368923
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 280  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  16368975 ggcttaaatattgcactcgtccctgcaaatatgatccgtttaagttttggtcc 16368923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 29847054 - 29847003
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtc 279  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  29847054 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtc 29847003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 20582638 - 20582691
Alignment:
Q  230 cttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||||||||||  |||||| |||||||||||||||||||||||    
T  20582638 cttaaatattgcactcgtccctacaaatatagtccgtttaagttttggtccttg 20582691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 33746712 - 33746764
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 280  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||    
T  33746712 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttcgtcc 33746764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 6851249 - 6851300
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtc 279  Q
    |||||||||||||||||||||| || ||||||| ||||||||||||||||||    
T  6851249 ggcttaaatattgcactcgtccatgcaaatatgatccgtttaagttttggtc 6851300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 16766635 - 16766580
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    ||||||||||||||| ||||||||| |||||||| ||||||| |||||||||||||    
T  16766635 ggcttaaatattgcaatcgtccctgcaaatatggcccgtttatgttttggtccttg 16766580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 33747026 - 33746971
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    |||||||||||||||| |||||||| |||||||| ||||||||||||| |||||||    
T  33747026 ggcttaaatattgcacccgtccctgcaaatatggcccgtttaagttttcgtccttg 33746971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 16766289 - 16766340
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtc 279  Q
    ||||||||||||||||||||||||| |||||||  || ||||||||||||||    
T  16766289 ggcttaaatattgcactcgtccctgcaaatatgacccatttaagttttggtc 16766340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 16368641 - 16368693
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 280  Q
    ||||||||||||||||||||||||| ||||||||   ||||||||||| ||||    
T  16368641 ggcttaaatattgcactcgtccctgcaaatatggcatgtttaagttttcgtcc 16368693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 29846789 - 29846841
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 280  Q
    ||||||||||||||||||||||||| ||||||||  | |||||||||| ||||    
T  29846789 ggcttaaatattgcactcgtccctgcaaatatgggtcatttaagttttcgtcc 29846841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 11242292 - 11242347
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    |||||||||||||||||||||||  |||||||||  | ||||||||||| ||||||    
T  11242292 ggcttaaatattgcactcgtccccataaatatggctcatttaagttttgatccttg 11242347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 11246426 - 11246371
Alignment:
Q  228 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 283  Q
    |||||||||||||||||| |||||| ||||||| || ||||||||||  |||||||    
T  11246426 ggcttaaatattgcactcatccctgcaaatatgatctgtttaagtttgagtccttg 11246371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 337 - 380
Target Start/End: Original strand, 33746821 - 33746864
Alignment:
Q  337 acccctgagctcatttaagtaatgacaagtcaccaaaatgccta 380  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  33746821 acccctgggcccatttaagtcatgacaagtcaccaaaatgccta 33746864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University