View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18948_high_19 (Length: 303)
Name: NF18948_high_19
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18948_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 47712132 - 47711858
Alignment:
| Q |
16 |
atgggaatctcaaggaggatcagatgattaagaggatatttgtattcagtgacatggagtttgatcaagcatctgcaaactcttgggaaactgattacca |
115 |
Q |
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| T |
47712132 |
atgggaatctcaaggaggatcagatgattaagaggatatttgtattcagtgacatggagtttgatcaagcatctgcaaactcttgggaaactgattacca |
47712033 |
T |
|
| Q |
116 |
agcaatcactaggaagtatagagagaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgatggcgaccccagtgtcagcc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712032 |
agcaatcactaggaagtatagagagaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgatggcgaccccagtgtcagcc |
47711933 |
T |
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| Q |
216 |
actcagaaaggagtggcgctgttaagtggattttctaagaatctgctgaaattgttcttggataatgaaggtgat |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47711932 |
actcagaaaggagtggcgctgttaagtggattttctaagaatctgctgaaattgttcttggataatgaaggtgat |
47711858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 19795233 - 19794959
Alignment:
| Q |
16 |
atgggaatctcaaggaggatcagatgattaagaggatatttgtattcagtgacatggagtttgatcaagcatctgcaaactcttgggaaactgattacca |
115 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||| || |
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| T |
19795233 |
atgggaatctcaaagaggatcagatgattaagaggatctttgtcttcagtgacatggaatttgatcaagcatctgcaaactcttgggagaccgattatca |
19795134 |
T |
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| Q |
116 |
agcaatcactaggaagtatagagagaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgatggcgaccccagtgtcagcc |
215 |
Q |
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| T |
19795133 |
agctattactaggaagtatagagaaaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgaaggccaccccggtgccatcc |
19795034 |
T |
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| Q |
216 |
actcagaaaggagtggcgctgttaagtggattttctaagaatctgctgaaattgttcttggataatgaaggtgat |
290 |
Q |
| |
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||||||||||||||||||||| ||||||| ||||| ||||||||||||| ||||||||| ||||| || |||||| |
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| T |
19795033 |
actcagaaaggagtggcgctggtaagtgggttttcgaagaatctgctgacattgttcttcgataacgatggtgat |
19794959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 16 - 289
Target Start/End: Original strand, 19786354 - 19786627
Alignment:
| Q |
16 |
atgggaatctcaaggaggatcagatgattaagaggatatttgtattcagtgacatggagtttgatcaagcatctgcaaactcttgggaaactgattacca |
115 |
Q |
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|
||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||| |||| |||| ||| ||||||| || |||||||| |
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| T |
19786354 |
atgggaatctcaaggaggatcagatgattaaaaggatcttcgttttcagtgacatggagtttgatgaagcgtctgtgaacccttgggagaccgattacca |
19786453 |
T |
|
| Q |
116 |
agcaatcactaggaagtatagagagaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgatggcgaccccagtgtcagcc |
215 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||| || |
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| T |
19786454 |
agcaatcactaggaagtatagcgagaaagggtatggttctgttgtgcctcagatagttttttggaatctgagagactcgagggccaccccagtgcgtgct |
19786553 |
T |
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| Q |
216 |
actcagaaaggagtggcgctgttaagtggattttctaagaatctgctgaaattgttcttggataatgaaggtga |
289 |
Q |
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|||||||||||||| |||||| | ||||| || |||||||||||||||| | ||||||| |||||||||||||| |
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| T |
19786554 |
actcagaaaggagttgcgctggtgagtggtttctctaagaatctgctgacactgttcttagataatgaaggtga |
19786627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 15834540 - 15834266
Alignment:
| Q |
16 |
atgggaatctcaaggaggatcagatgattaagaggatatttgtattcagtgacatggagtttgatcaagcatctgcaaactcttgggaaactgattacca |
115 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |||||||| || | |||||| |
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| T |
15834540 |
atgggaatctgaaggaggatcagatgattaagaggatatttgtatttagtgacatggagtttgatcgagcgtctgcaaaatcttgggagaccggttacca |
15834441 |
T |
|
| Q |
116 |
agcaatcactaggaagtatagagagaaagggtatggttctgctgtgcctcagatagttttttggaatctgagagactcgatggcgaccccagtgtcagcc |
215 |
Q |
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|| ||||||||||| | ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| || ||||| ||| || || |
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| T |
15834440 |
agttatcactaggaaatttagagagaaagggtatggttctgttttgcctcagatagttttttggaatctgagagattcgatcgccaccccggtgccatcc |
15834341 |
T |
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| Q |
216 |
actcagaaaggagtggcgctgttaagtggattttctaagaatctgctgaaattgttcttggataatgaaggtgat |
290 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||| |||| ||||||||||||||||||||||||| |
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| T |
15834340 |
actcagaaaggagtggcgctgttaagtgggttttcgaagaatctactgacattgttcttggataatgaaggtgat |
15834266 |
T |
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