View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18948_high_20 (Length: 301)

Name: NF18948_high_20
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18948_high_20
NF18948_high_20
[»] chr5 (5 HSPs)
chr5 (11-283)||(16790733-16791006)
chr5 (194-283)||(25570107-25570194)
chr5 (194-283)||(28760809-28760900)
chr5 (194-283)||(24884893-24884980)
chr5 (245-283)||(9824681-9824719)
[»] chr7 (6 HSPs)
chr7 (194-283)||(19842136-19842223)
chr7 (194-283)||(20053587-20053674)
chr7 (196-283)||(17915941-17916026)
chr7 (245-281)||(4876723-4876759)
chr7 (245-283)||(232258-232296)
chr7 (245-283)||(9261033-9261071)
[»] chr8 (9 HSPs)
chr8 (194-283)||(5826661-5826748)
chr8 (194-283)||(5829266-5829353)
chr8 (194-283)||(211048-211135)
chr8 (194-283)||(241121-241208)
chr8 (194-283)||(724671-724758)
chr8 (194-283)||(794476-794563)
chr8 (245-283)||(18566215-18566253)
chr8 (245-283)||(13645704-13645742)
chr8 (245-283)||(13746129-13746167)
[»] chr3 (7 HSPs)
chr3 (196-283)||(44755333-44755418)
chr3 (245-283)||(9323984-9324022)
chr3 (245-283)||(13340427-13340465)
chr3 (198-283)||(21318733-21318816)
chr3 (229-281)||(15330957-15331007)
chr3 (245-283)||(11360489-11360527)
chr3 (245-283)||(13177527-13177565)
[»] chr2 (5 HSPs)
chr2 (194-283)||(25348439-25348526)
chr2 (196-283)||(16197128-16197212)
chr2 (245-283)||(26652806-26652844)
chr2 (245-283)||(16151885-16151923)
chr2 (245-283)||(26654349-26654387)
[»] chr1 (2 HSPs)
chr1 (194-283)||(9985182-9985269)
chr1 (255-283)||(34188205-34188233)
[»] chr6 (7 HSPs)
chr6 (194-282)||(21686691-21686777)
chr6 (194-283)||(27124668-27124755)
chr6 (245-280)||(10482478-10482513)
chr6 (194-283)||(14201654-14201741)
chr6 (205-283)||(7775136-7775212)
chr6 (245-283)||(19134124-19134162)
chr6 (245-283)||(19731926-19731964)
[»] scaffold0300 (2 HSPs)
scaffold0300 (196-279)||(7718-7799)
scaffold0300 (196-283)||(12437-12522)
[»] chr4 (4 HSPs)
chr4 (245-283)||(22316367-22316405)
chr4 (194-283)||(5842478-5842565)
chr4 (245-283)||(8912077-8912115)
chr4 (245-283)||(16321858-16321896)
[»] scaffold0041 (1 HSPs)
scaffold0041 (245-283)||(26897-26935)
[»] scaffold0002 (1 HSPs)
scaffold0002 (245-283)||(129423-129461)


Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 283
Target Start/End: Original strand, 16790733 - 16791006
Alignment:
Q  11 cacagaggatgataatgctcttttaacaaccccctttcaacctcaagaatatgttttctatgcacccgaataaatatcctgtcctagacggttttaatcc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16790733 cacagaggatgataatgctcttttaacaaccccctttcaacctcaagaatatgttttctatgcacccgaataaatgtcctgtcctagacggttttaatcc 16790832  T
Q  111 tagattttttcagcatttttgatctattagtagactctgatatttttaatgagtgttgtatgt-ggttaataataattagtagatcatatgttccttctt 209  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16790833 tagattttttcagcatttttgatctattagtagaccctgatatttttaatgagtgttgtatgtgggttaataataattagtagatcatatgttccttctt 16790932  T
Q  210 catgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  16790933 catgataagtagatcatgtgcacttgaacatataagttagtatttcaattgtttttcaatactttgctatcatc 16791006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 25570107 - 25570194
Alignment:
Q  194 tcatatgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    ||||||||| ||||||||||||||||| || |||  ||| |||||||||  ||||||| |||||||||| ||||||||||||||||||||    
T  25570107 tcatatgtttcttcttcatgataagtaaattatgcacacttgaacatat--gttagtaatccaattgttcttcaatactttgttatcatc 25570194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 28760809 - 28760900
Alignment:
Q  194 tcatatgttccttcttcatgataagtagatcatgtgcacctgaacatat--aagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    ||||||||||||||||||||||||| ||||| ||  ||  |||||||||  | |||||||| ||||||||| ||||||||||||||||||||    
T  28760809 tcatatgttccttcttcatgataaggagatcctgcacatttgaacatatgtatgttagtataccaattgttcttcaatactttgttatcatc 28760900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 283
Target Start/End: Complemental strand, 24884980 - 24884893
Alignment:
Q  194 tcatatgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||||| |||||||||||||| | ||||||  ||| |||||||||  ||||||||  ||||| || || |||||||||||||||||    
T  24884980 tcatatgttcgttcttcatgataaggaaatcatgcacacttgaacatat--gttagtatatcaattattctttaatactttgttatcatc 24884893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 9824681 - 9824719
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatcatc 283  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  9824681 gttagtatttcaattgttcttcaatactttgttatcatc 9824719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 283
Target Start/End: Complemental strand, 19842223 - 19842136
Alignment:
Q  194 tcatatgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||||| |||||||||||||||||||| ||  ||| |||||||||  ||||||||| |||||||| ||||||||||||||||||||    
T  19842223 tcatatgttctttcttcatgataagtagatcctgcacacttgaacatat--gttagtattgcaattgttcttcaatactttgttatcatc 19842136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 20053587 - 20053674
Alignment:
Q  194 tcatatgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||||||||||||| | |||||||||| ||  ||| |||||||||  |||||||||||||||||| ||||||||||||||||||||    
T  20053587 tcatatgttccttcttcaaggtaagtagatcctgcacacttgaacatat--gttagtattccaattgttcttcaatactttgttatcatc 20053674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 283
Target Start/End: Original strand, 17915941 - 17916026
Alignment:
Q  196 atatgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    ||||||||||| || |||||||||||||||||  ||| |  | ||||| ||||||||||| |||||| ||||||||||| ||||||||    
T  17915941 atatgttccttattaatgataagtagatcatgcacactt--aaatatatgttagtattcctattgttcttcaatactttattatcatc 17916026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 4876723 - 4876759
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatca 281  Q
    |||||||||||||||||| ||||||||||||||||||    
T  4876723 gttagtattccaattgttcttcaatactttgttatca 4876759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 232296 - 232258
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  232296 gttagtattccaattgttcttcaatattttgttatcatc 232258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 9261071 - 9261033
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatcatc 283  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  9261071 gttagtattccaattattcttcaatactttgttatcatc 9261033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 5826661 - 5826748
Alignment:
Q  194 tcatatgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||||| |||||||||||||||||||||||  ||| || ||||||  |||| ||||||||||||| | ||||||||||||||||||    
T  5826661 tcatatgttctttcttcatgataagtagatcatgcacacttggacatat--gttaatattccaattgttctgcaatactttgttatcatc 5826748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 5829266 - 5829353
Alignment:
Q  194 tcatatgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||||| |||||||||||||||||||||||  ||| || ||||||  |||  ||||||||||||| | ||||||||||||||||||    
T  5829266 tcatatgttctttcttcatgataagtagatcatgcacacttggacatat--gtttatattccaattgttctgcaatactttgttatcatc 5829353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 283
Target Start/End: Complemental strand, 211135 - 211048
Alignment:
Q  194 tcatatgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    ||||||||| ||||||||||||||| || || ||  ||| |||||||||  |||||||||||||||||| ||||| | ||||||||||||    
T  211135 tcatatgtttcttcttcatgataaggagttcctgctcacttgaacatat--gttagtattccaattgttcttcaacagtttgttatcatc 211048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 241121 - 241208
Alignment:
Q  194 tcatatgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    ||||||||| ||||||||||||||| || || ||  ||| |||||||||  |||||||||||||||||| ||||| | ||||||||||||    
T  241121 tcatatgtttcttcttcatgataaggagttcctgctcacttgaacatat--gttagtattccaattgttcttcaacagtttgttatcatc 241208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 283
Target Start/End: Complemental strand, 724758 - 724671
Alignment:
Q  194 tcatatgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    ||||||||| ||||||||||||||| || || ||  ||| |||||||||  |||||||||||||||||| ||||| | ||||||||||||    
T  724758 tcatatgtttcttcttcatgataaggagttcctgctcacttgaacatat--gttagtattccaattgttcttcaacagtttgttatcatc 724671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 794476 - 794563
Alignment:
Q  194 tcatatgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    ||||||||| ||||||||||||||| || || ||  ||| |||||||||  |||||||||||||||||| ||||| | ||||||||||||    
T  794476 tcatatgtttcttcttcatgataaggagttcctgctcacttgaacatat--gttagtattccaattgttcttcaacagtttgttatcatc 794563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 18566215 - 18566253
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  18566215 gttagtattccaattgttcttcaatactttgttatcatc 18566253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 13645704 - 13645742
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  13645704 gttagtataccaattgttattcaatactttgttatcatc 13645742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 13746129 - 13746167
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  13746129 gttagtataccaattgttattcaatactttgttatcatc 13746167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 283
Target Start/End: Original strand, 44755333 - 44755418
Alignment:
Q  196 atatgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    ||||||||||||||||||||||| ||||||||  ||| |||||||||  |||||||| | |||||||| ||||| |||||||||||||    
T  44755333 atatgttccttcttcatgataaggagatcatgcacacttgaacatat--gttagtatacaaattgtttctcaatgctttgttatcatc 44755418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 9323984 - 9324022
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  9323984 gttagtattccaattgttcttcaatactttgttatcatc 9324022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 13340465 - 13340427
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  13340465 gttagtattccaattgttcttcaatactttgttatcatc 13340427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 283
Target Start/End: Original strand, 21318733 - 21318816
Alignment:
Q  198 atgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||| ||||| |||||| |||||| |||  ||| ||||||| |  |||||||||||||||||| ||||||||||| ||||||||    
T  21318733 atgttctttcttaatgataggtagattatgcacacttgaacattt--gttagtattccaattgttcttcaatactttattatcatc 21318816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 15331007 - 15330957
Alignment:
Q  229 gcacctgaacatataagttagtattccaattgtttttcaatactttgttatca 281  Q
    |||| |||||||||  |||||||||||||||||| ||||||||||||||||||    
T  15331007 gcacttgaacatat--gttagtattccaattgttcttcaatactttgttatca 15330957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 11360527 - 11360489
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  11360527 gttagtattccaattgttcttcaatactttgtcatcatc 11360489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 13177565 - 13177527
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  13177565 gttagtattccaattgttcttcaatacttttttatcatc 13177527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 25348439 - 25348526
Alignment:
Q  194 tcatatgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    ||||||| ||||||||||||||| ||||||| ||  ||| |||||||||  ||||||||  |||||||| ||||||||||||||||||||    
T  25348439 tcatatgatccttcttcatgatacgtagatcctgcacacttgaacatat--gttagtatatcaattgttcttcaatactttgttatcatc 25348526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 283
Target Start/End: Complemental strand, 16197212 - 16197128
Alignment:
Q  196 atatgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    ||||||||||||||||||||||||||||| ||  ||| ||||||||||  |||||||  |||||||| |||||||| |||||||||||    
T  16197212 atatgttccttcttcatgataagtagatc-tgcacacttgaacatata--ttagtatatcaattgttcttcaataccttgttatcatc 16197128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 26652844 - 26652806
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  26652844 gttagtattccaattgttcttcaatactttgttatcatc 26652806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 16151923 - 16151885
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  16151923 gttagtattccaattgttcttcaatactctgttatcatc 16151885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 26654387 - 26654349
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  26654387 gttagtcttccaattgttcttcaatactttgttatcatc 26654349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 9985182 - 9985269
Alignment:
Q  194 tcatatgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    ||||||||||||||||||||||||| || || ||  ||| |||||||||  ||||||||| |||||||| ||||||| ||||||||||||    
T  9985182 tcatatgttccttcttcatgataaggagttcctgcacacttgaacatat--gttagtatttcaattgttcttcaataatttgttatcatc 9985269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 283
Target Start/End: Original strand, 34188205 - 34188233
Alignment:
Q  255 caattgtttttcaatactttgttatcatc 283  Q
    |||||||||||||||||||||||||||||    
T  34188205 caattgtttttcaatactttgttatcatc 34188233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 21686777 - 21686691
Alignment:
Q  194 tcatatgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcat 282  Q
    ||||||||||||||||||||||||  || || ||  ||| |||||||||  |||||||||||||||||| ||||||||||||| |||||    
T  21686777 tcatatgttccttcttcatgataacgagttcctgcacacttgaacatat--gttagtattccaattgttcttcaatactttgtcatcat 21686691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 27124668 - 27124755
Alignment:
Q  194 tcatatgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||||||||||||| |||||  ||||| ||  ||| ||| |||||  |||||||| ||||||||| ||||||||||||||||||||    
T  27124668 tcatatgttccttcttcaagataaagagatcctgcacacttgatcatat--gttagtataccaattgttcttcaatactttgttatcatc 27124755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 280
Target Start/End: Original strand, 10482478 - 10482513
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatc 280  Q
    ||||||||||||||||||||||||||||||||||||    
T  10482478 gttagtattccaattgtttttcaatactttgttatc 10482513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 14201654 - 14201741
Alignment:
Q  194 tcatatgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    ||||||||| |||||||| |||||| ||||| |   ||| |||||||||  |||||||||||||||||  || |||||||||||||||||    
T  14201654 tcatatgtttcttcttcaagataagcagatcttccacacttgaacatat--gttagtattccaattgtactttaatactttgttatcatc 14201741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 7775212 - 7775136
Alignment:
Q  205 ttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||| ||||||| ||| ||| ||| ||| ||||||||||  |||||||| ||||| || ||||||||||||||||||||    
T  7775212 ttctacatgatatgtaaatcctgtacacttgaacatata--ttagtatttcaattattcttcaatactttgttatcatc 7775136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 19134124 - 19134162
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  19134124 gttagtattccaattgttcttcaatactttgatatcatc 19134162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 19731926 - 19731964
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatcatc 283  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  19731926 gttagtattccaattgttcatcaatactttgttatcatc 19731964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 7718 - 7799
Alignment:
Q  196 atatgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttat 279  Q
    |||||||| |||||||||||||  || |||||  ||| |||||||||  |||||||| ||||||||||||||||||||||||||    
T  7718 atatgttctttcttcatgataaagagttcatgcacacttgaacatat--gttagtataccaattgtttttcaatactttgttat 7799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 283
Target Start/End: Original strand, 12437 - 12522
Alignment:
Q  196 atatgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||| |||||||||||||| || ||||||  |  |||||||||  |||||||| ||||||||| ||||||||||||||||||||    
T  12437 atatgttcattcttcatgataaggagttcatgtatatttgaacatat--gttagtataccaattgttcttcaatactttgttatcatc 12522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 22316405 - 22316367
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  22316405 gttagtattccaattgttcttcaatactttgttatcatc 22316367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 283
Target Start/End: Complemental strand, 5842565 - 5842478
Alignment:
Q  194 tcatatgttccttcttcatgataagtagatcatgtgcacctgaacatataagttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||| | ||||||||||||  |||||  ||  ||| |||||||||  ||||||||| | ||| |||||||||||||||||||||||    
T  5842565 tcatatgtcctttcttcatgatagatagattctgcacacttgaacatat--gttagtatttctattatttttcaatactttgttatcatc 5842478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 8912077 - 8912115
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  8912077 gttagtattccaattgttcttcaatgctttgttatcatc 8912115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 16321896 - 16321858
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  16321896 gttagtattcaaattgttcttcaatactttgttatcatc 16321858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 26897 - 26935
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  26897 gttagtattccaattgttcttcgatactttgttatcatc 26935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 129423 - 129461
Alignment:
Q  245 gttagtattccaattgtttttcaatactttgttatcatc 283  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  129423 gttagtattccaattgttcttcaatacttttttatcatc 129461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University