View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18948_high_28 (Length: 233)
Name: NF18948_high_28
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18948_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 27250088 - 27250287
Alignment:
| Q |
19 |
cttgtgtcttgtttttgttgcttgtgtgtggatgcagaaaacaattgcttcaccagggcgtggtattttagccatggatgaatccaatgctacatgtgga |
118 |
Q |
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| T |
27250088 |
cttgtgtcttgtttttgttgcttgtgtgtggatgcagaaaacaattgcttcaccagggcgtggtattttagccatggatgaatccaatgctacatgtgga |
27250187 |
T |
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| Q |
119 |
aagcgtttggcttcaattgggctagaaaacactgaagctaaccgccaagcatggcgtacccttcttgtgacagttccatctcttggagattatatctctg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27250188 |
aagcgtttggcttcaattgggctagaaaacactgaagctaaccgccaagcatggcgtacccttcttgtgacagttccatctcttggagactatatctctg |
27250287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 21194315 - 21194514
Alignment:
| Q |
19 |
cttgtgtcttgtttttgttgcttgtgtgtggatgcagaaaacaattgcttcaccagggcgtggtattttagccatggatgaatccaatgctacatgtgga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21194315 |
cttgtgtcttgtttttgttgcttgtgtgtggatgcagaaaacaattgcttcaccagggcgtggaattttagccatggatgaatccaatgctacatgtgga |
21194414 |
T |
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| Q |
119 |
aagcgtttggcttcaattgggctagaaaacactgaagctaaccgccaagcatggcgtacccttcttgtgacagttccatctcttggagattatatctctg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21194415 |
aagcgtttggcttcaattgggctagaaaacactgaagctaaccgccaagcatggcgtacccttcttgtgacagttccatctcttggagactatatctctg |
21194514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 30 - 218
Target Start/End: Original strand, 27261928 - 27262116
Alignment:
| Q |
30 |
tttttgttgcttgtgtgtggatgcagaaaacaattgcttcaccagggcgtggtattttagccatggatgaatccaatgctacatgtggaaagcgtttggc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| || ||||||| |
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| T |
27261928 |
tttttgttgcttgtgtgtggatgcagaaaacaattgcttcaccaggacgtggtattttggccatggatgagtccaatgctacttgtgggaaaagtttggc |
27262027 |
T |
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| Q |
130 |
ttcaattgggctagaaaacactgaagctaaccgccaagcatggcgtacccttcttgtgacagttccatctcttggagattatatctctg |
218 |
Q |
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||||||||||||||| ||||| |||| |||||||| |||||||||||| ||||| ||||||||||||||||||||||| || ||||||| |
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| T |
27262028 |
ttcaattgggctagagaacaccgaagttaaccgcccagcatggcgtactcttctggtgacagttccatctcttggagagtacatctctg |
27262116 |
T |
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