View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18948_high_29 (Length: 228)
Name: NF18948_high_29
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18948_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 5 - 153
Target Start/End: Original strand, 39030408 - 39030556
Alignment:
| Q |
5 |
gtcataattatgcaaaaaagaagagacgatatttttacaagtcttacatctaaataatgctacnnnnnnnnnnnnnnnncctccaatggggctgctaata |
104 |
Q |
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| T |
39030408 |
gtcataattatggaaaaaaaaagagacgatatttttacaagtcttacatataaataacactactttttatttttattttcctccaatggggcagctaata |
39030507 |
T |
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| Q |
105 |
agctctatatgctattaagctaataagctctaacacatcttaaaacgta |
153 |
Q |
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| T |
39030508 |
agctctatatgctattaagctaataagctctaacacatcttaaaacgta |
39030556 |
T |
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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 39030680 - 39030740
Alignment:
| Q |
151 |
gtaataagtaaacaataatttaaacattgaactnnnnnnntaaaatctaaacgtgtgaaaaa |
212 |
Q |
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| T |
39030680 |
gtaataagtaaacaataatttaaacattgaact-aaaaaataaaatctaaacgtgtgaaaaa |
39030740 |
T |
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