View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18948_high_30 (Length: 223)

Name: NF18948_high_30
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18948_high_30
NF18948_high_30
[»] chr4 (3 HSPs)
chr4 (12-223)||(21194491-21194702)
chr4 (12-223)||(27250264-27250475)
chr4 (90-223)||(27262093-27262226)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 21194702 - 21194491
Alignment:
Q  12 attctttccataaattatgcagtatatcaaaaattgaaatttcattttagtaacaacagaaggtaattccaaatggcttaccttgtcaactttgattcca 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21194702 attctttccatcaattatgcagtatatcaaaaattgaaatttcattttagtaacaacagaaggtaattccaaatggcttaccttgtcaactttgattcca 21194603  T
Q  112 ggaacaatgttttgctcgataagcacgtcaacaatcttccttccatcaactgtagattggtagagagtttcctcaaagagaatggcaccagagatataat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  21194602 ggaacaatgttttgctcgataagcacgtcaacaatcttccttccatcaactgtagattggtagagagtttcctcaaatagaatggcaccagagatatagt 21194503  T
Q  212 ctccaagagatg 223  Q
    ||||||||||||    
T  21194502 ctccaagagatg 21194491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 27250475 - 27250264
Alignment:
Q  12 attctttccataaattatgcagtatatcaaaaattgaaatttcattttagtaacaacagaaggtaattccaaatggcttaccttgtcaactttgattcca 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27250475 attctttccatcaattatgcagtatatcaaaaattgaaatttcattttagtaacaacagaaggtaattccaaatggcttaccttgtcaactttgattcca 27250376  T
Q  112 ggaacaatgttttgctcgataagcacgtcaacaatcttccttccatcaactgtagattggtagagagtttcctcaaagagaatggcaccagagatataat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  27250375 ggaacaatgttttgctcgataagcacgtcaacaatcttccttccatcaactgtagattggtagagagtttcctcaaaaagaatggcaccagagatatagt 27250276  T
Q  212 ctccaagagatg 223  Q
    ||||||||||||    
T  27250275 ctccaagagatg 27250264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 27262226 - 27262093
Alignment:
Q  90 taccttgtcaactttgattccaggaacaatgttttgctcgataagcacgtcaacaatcttccttccatcaactgtagattggtagagagtttcctcaaag 189  Q
    ||||||||||||||| ||  ||||||||||||||| ||| ||||| || || |||||||||||||||||   ||| |||||||||||||| |||||||||    
T  27262226 taccttgtcaactttaatatcaggaacaatgttttactcaataagtacatccacaatcttccttccatctgttgtggattggtagagagtctcctcaaag 27262127  T
Q  190 agaatggcaccagagatataatctccaagagatg 223  Q
    ||||||||||||||||| || |||||||||||||    
T  27262126 agaatggcaccagagatgtactctccaagagatg 27262093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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