View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18948_low_10 (Length: 425)
Name: NF18948_low_10
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18948_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 23 - 410
Target Start/End: Complemental strand, 33000709 - 33000322
Alignment:
| Q |
23 |
taacatgcaagcaaaaatcaaatgcaagatatgaagtaatgagggaagaaaaatagttaagtcaaggatggaataagaagatcttaaacctgtaatctag |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33000709 |
taacatgcaagcaaaaatcaaatgcaagatatgaagtaatgagggaataaaaatagttaagtcaaggatggaataagaagatcttaaacctgtaa-ctag |
33000611 |
T |
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| Q |
123 |
aattgaaattctgctgagttgatgaaggaggaagaaaattcaattgttttagtatcaatgatttctttcctaggagttttctaatggagtgattgatagt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
33000610 |
aattgaaattctgctgagttgatgaaggaggaagaaaattcaattgctttagtatcaatgatttctttactaggaggtttctaatggagtgattgatagt |
33000511 |
T |
|
| Q |
223 |
agtaattgcttgaaatttgaggaaaacaataatgtgtgattaatgataatcaattgccaagatacgttgatagtattggttgtgtatgttttggttagtg |
322 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33000510 |
agtaattgcttgaaatttgacgaaaacaataatgtgtgattaatgataatcaattgccaagatacgttgatagtattggttgtgtatgttttggttagtg |
33000411 |
T |
|
| Q |
323 |
aagaattaaggcattttaggccaaat-caaggtcaaatcggtcccaaataataatattatagatggcctcgtccactcaccatctagct |
410 |
Q |
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| T |
33000410 |
aagaattaaggcattttaggccaaatccaaggtcaaatcggtcccaaataataatattatagatggcctcgtccactcaccatctagct |
33000322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 21871095 - 21871178
Alignment:
| Q |
27 |
atgcaagcaaaaatcaaatgcaagatatgaagtaatgagggaagaaaaatagttaagtcaaggatggaataagaagatcttaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| ||||||||| ||||| |
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| T |
21871095 |
atgcaagcaaaaatcaaatgcaagatatgaagtagtaagggaagaaaaatagttaagtcagggatggattaagaagattttaaa |
21871178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 21926956 - 21927039
Alignment:
| Q |
27 |
atgcaagcaaaaatcaaatgcaagatatgaagtaatgagggaagaaaaatagttaagtcaaggatggaataagaagatcttaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||| ||||||||| ||||| |
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| T |
21926956 |
atgcaagcaaaaatcaaatgcaagatatgaagtagtaagggaagaaaaatagttaagtcagggatggattaagaagattttaaa |
21927039 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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