View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18948_low_12 (Length: 416)

Name: NF18948_low_12
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18948_low_12
NF18948_low_12
[»] chr3 (19 HSPs)
chr3 (1-399)||(22435498-22435896)
chr3 (1-399)||(22366791-22367189)
chr3 (29-400)||(22441611-22441976)
chr3 (33-372)||(22466842-22467181)
chr3 (33-399)||(22629310-22629676)
chr3 (31-400)||(22356856-22357234)
chr3 (185-399)||(37929623-37929837)
chr3 (34-372)||(22352704-22353044)
chr3 (31-198)||(22430235-22430402)
chr3 (182-392)||(22634332-22634542)
chr3 (31-166)||(37929959-37930094)
chr3 (187-297)||(22457467-22457577)
chr3 (187-297)||(22480448-22480558)
chr3 (246-299)||(22430160-22430213)
chr3 (111-170)||(22634602-22634661)
chr3 (188-293)||(30988275-30988380)
chr3 (241-296)||(22180855-22180910)
chr3 (244-296)||(22106161-22106213)
chr3 (244-296)||(22116535-22116587)
[»] chr4 (1 HSPs)
chr4 (111-297)||(29604400-29604580)
[»] chr7 (2 HSPs)
chr7 (248-293)||(871755-871800)
chr7 (248-293)||(1233032-1233077)


Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 22435896 - 22435498
Alignment:
Q  1 ttgaaggtacttgctttgagctcaaaacaacttgaaattcctcatgatttgggaagtttgaaccacttgaaattttttgggttcagggtgattggagaaa 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22435896 ttgaaggtacttgctttaagctcaaaacaacttgaaattcctcatgatttgggaagtttgaaccacttgaaattttttgggttcagggtgattggagaaa 22435797  T
Q  101 aatattctgaacttccgaaatccattggcatgctcgtgaacctagagactttagatttaagatctacaaagtttgagaatcgtaatatgccgaaggagat 200  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| |||||| |    
T  22435796 aatattctgaacttccaaaatccattggcatgctcgtgaacctagagactttggatttaagatctacagagtttgaaaatcgtaatatgccaaaggaggt 22435697  T
Q  201 ttgcaagcttagaaagctacgtcattttttagtcgattgtctgtctttgattcaactgaaggatggtattggaggcatgacatccctacaaactctaagt 300  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||    
T  22435696 ttgcaagcttagaaagctacgtcattttttaggcgattctctgtctttgattcatttgaaggatggtattggaggcatgacatcgctacaaactctaagt 22435597  T
Q  301 agagtacgcttagatgatggtgaagatgaaaatgataatagggtagtagagctaatcatagagctaggaaagttaacacaacttagggaattgggcttg 399  Q
    | |||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  22435596 aaagttaaattagatgatggtgaagatgaaaatgataatagggtagtagagctaatcatagagctaggaaagctaacacagcttagggaattgggcttg 22435498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 22367189 - 22366791
Alignment:
Q  1 ttgaaggtacttgctttgagctcaaaacaacttgaaattcctcatgatttgggaagtttgaaccacttgaaattttttgggttcagggtgattggagaaa 100  Q
    |||||||| ||| |||| |||||||| |||| |||||||||||||||||| |||||||||||||||||||||| |||| ||||||||| || ||||||||    
T  22367189 ttgaaggtgcttactttaagctcaaaccaacatgaaattcctcatgatttaggaagtttgaaccacttgaaatatttttggttcagggggaatggagaaa 22367090  T
Q  101 aatattctgaacttccgaaatccattggcatgctcgtgaacctagagactttagatttaagatctacaaagtttgagaatcgtaatatgccgaaggagat 200  Q
     | ||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||   ||| ||||| | |||||||||||||||||||||||    
T  22367089 gaaattctgaacttccaaaatccattggcatgcttgtgaacctagagactttggatttaagagaaacagagtttaaaaatcgtaatatgccgaaggagat 22366990  T
Q  201 ttgcaagcttagaaagctacgtcattttttagtcgattgtctgtctttgattcaactgaaggatggtattggaggcatgacatccctacaaactctaagt 300  Q
    ||||||||||||||||||||| |||||||||| | || || ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||| |    
T  22366989 ttgcaagcttagaaagctacgccattttttaggctatcgtatgtctttgattgagttgaaggatggtattggaggcatgacatccctacaaactctaaat 22366890  T
Q  301 agagtacgcttagatgatggtgaagatgaaaatgataatagggtagtagagctaatcatagagctaggaaagttaacacaacttagggaattgggcttg 399  Q
       ||    ||| |||||  ||||||||||||||||||||| || |||||||||||   ||||||||||||  |||  || || |||||||||||||||    
T  22366889 gaggtttatttatatgatcatgaagatgaaaatgataatagagtcgtagagctaattgaagagctaggaaaactaaagcagctaagggaattgggcttg 22366791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 29 - 400
Target Start/End: Complemental strand, 22441976 - 22441611
Alignment:
Q  29 aacttgaaattcctcatgatttgggaagtttgaaccacttgaaattttttgggttcagggtgattggagaaaaatattctgaacttccgaaatccattgg 128  Q
    ||||||||||||||  |||||||||||||||||| |||||||||| ||||||| | |  ||      ||  |||| || ||||||||| |||||||||||    
T  22441976 aacttgaaattcctattgatttgggaagtttgaagcacttgaaatattttgggataaatgt------aggtaaatgttttgaacttccaaaatccattgg 22441883  T
Q  129 catgctcgtgaacctagagactttagatttaagatctacaaagtttgagaatcgtaatatgccgaaggagatttgcaagcttagaaagctacgtcatttt 228  Q
    |||||||||||||||||||||||| |||||||||  |||| | ||||  |||  ||||||||||||||||||||||||||||||||||||||| ||||||    
T  22441882 catgctcgtgaacctagagactttggatttaagagatacatattttgtaaatgataatatgccgaaggagatttgcaagcttagaaagctacgccatttt 22441783  T
Q  229 ttagtcgattgtctgtctttgattcaactgaaggatggtattggaggcatgacatccctacaaactctaagtagagtacgcttagatgatggtgaagatg 328  Q
    |||| | || || ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||| |||||  ||    
T  22441782 ttaggctatcgtatgtctttgattgagttgaaggatggtattggaggcatgacatccctacaaactctaagtggagtacacttaaatgatagtgaacgtg 22441683  T
Q  329 aaaatgataatagggtagtagagctaatcatagagctaggaaagttaacacaacttagggaattgggcttga 400  Q
    ||||||||||||| || ||||||||||||  ||||||||||||| ||| ||| || ||| ||||||||||||    
T  22441682 aaaatgataatagagttgtagagctaatccaagagctaggaaagctaaaacagctaaggaaattgggcttga 22441611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 33 - 372
Target Start/End: Complemental strand, 22467181 - 22466842
Alignment:
Q  33 tgaaattcctcatgatttgggaagtttgaaccacttgaaattttttgggttcagggtgattggagaaaaatattctgaacttccgaaatccattggcatg 132  Q
    |||||||||| |||||||||||||||||||||||||||||| | ||| |||| || ||||||||| || |||||||| |||||| |||||||||||||||    
T  22467181 tgaaattcctaatgatttgggaagtttgaaccacttgaaatatcttgagttcgggatgattggaggaagatattctggacttccaaaatccattggcatg 22467082  T
Q  133 ctcgtgaacctagagactttagatttaagatctacaaagtttgagaatcgtaatatgccgaaggagatttgcaagcttagaaagctacgtcattttttag 232  Q
     |||  ||| |||||||||| |||||||||| ||  || | ||| | |||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  22467081 atcgcaaacttagagactttggatttaagatatagcaattatgaaattcgtgatatgccaaaggagatttgcaagcttagaaagctacgccatttattag 22466982  T
Q  233 tcgattgtctgtctttgattcaactgaaggatggtattggaggcatgacatccctacaaactctaagtagagtacgcttagatgatggtgaagatgaaaa 332  Q
     ||||||| |||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||  |||    ||||||||   ||||||||||||    
T  22466981 gcgattgtatgtctttgattcagttgaaggatggtattggaggcatgacatctctacaaactctaagtgaagtttatttagatgagaatgaagatgaaaa 22466882  T
Q  333 tgataatagggtagtagagctaatcatagagctaggaaag 372  Q
    ||||||||| ||||||||||||||   |||||||||||||    
T  22466881 tgataatagagtagtagagctaattcaagagctaggaaag 22466842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 33 - 399
Target Start/End: Complemental strand, 22629676 - 22629310
Alignment:
Q  33 tgaaattcctcatgatttgggaagtttgaaccacttgaaattttttgggttcagggtgattggagaaaaatattctgaacttccgaaatccattggcatg 132  Q
    |||||||||| |||||| ||||||||||||||||||||||| ||||| ||||  | ||||||||| || | ||| || | |||| |||||||||||||||    
T  22629676 tgaaattcctaatgattagggaagtttgaaccacttgaaatattttgagttcctgatgattggaggaagagattttggaattccaaaatccattggcatg 22629577  T
Q  133 ctcgtgaacctagagactttagatttaagatctacaaagtttgagaatcgtaatatgccgaaggagatttgcaagcttagaaagctacgtcattttttag 232  Q
    |||||||||||||||||||| |||||||||  || || |  ||| |||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||    
T  22629576 ctcgtgaacctagagactttggatttaagacatagaatgactgaaaatcgtaatatgccaaaggagatttgcatgcttagaaagctacgccattttttag 22629477  T
Q  233 tcgattgtctgtctttgattcaactgaaggatggtattggaggcatgacatccctacaaactctaagtagagtacgcttagatgatggtgaagatgaaaa 332  Q
     |  | || ||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||| ||| ||  | |||||||||   |||||||||||    
T  22629476 gcattcgtatgtctttgattgagttgaaggatagtattggaggcatgacatccctacaaactctaaatagtgtttgtttagatgataaggaagatgaaaa 22629377  T
Q  333 tgataatagggtagtagagctaatcatagagctaggaaagttaacacaacttagggaattgggcttg 399  Q
    ||||||||| || ||||||||||||  ||| ||||||||| |||  || || |||||||||| ||||    
T  22629376 tgataatagagtggtagagctaatcgaagatctaggaaagctaaatcagctaagggaattggtcttg 22629310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 31 - 400
Target Start/End: Complemental strand, 22357234 - 22356856
Alignment:
Q  31 cttgaaattcctcatgatttgggaagtttgaaccacttgaaattttttgggttcagggtgattggagaaaaatattctg---------aacttccgaaat 121  Q
    |||||| ||||| | |||||||||||||||||||||||||||| ||||||||||   ||||||||||||| |||| ||          || |||| ||||    
T  22357234 cttgaagttcctaaggatttgggaagtttgaaccacttgaaatattttgggttctttgtgattggagaaacatatcctatatttccaaaaattccaaaat 22357135  T
Q  122 ccattggcatgctcgtgaacctagagactttagatttaagatctacaaagtttgagaatcgtaatatgccgaaggagatttgcaagcttagaaagctacg 221  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||| |||||  ||| |||||||||||||||||||||||||||||||||||||||    
T  22357134 ccattggcatgctcgtgaacctagagactttggatttaagatctccaaaatttgaacatcctaatatgccgaaggagatttgcaagcttagaaagctacg 22357035  T
Q  222 tcattttttagtcgattgtctgtctttgattcaactgaaggatggtattggaggcatgacatccctacaaactctaagtagagtacgcttagatgatggt 321  Q
     ||||| |||| | | | | |||||||||||||  |||||||||||||||||||||||||||| ||||||||||||| ||| ||    |||||||||  |    
T  22357034 ccatttattaggcaactttatgtctttgattcagttgaaggatggtattggaggcatgacatcgctacaaactctaaatagtgtttatttagatgattat 22356935  T
Q  322 gaagatgaaaatgataatagggtagtagagctaatcatagagctaggaaagttaacacaacttagggaattgggcttga 400  Q
    |||||||||||||||||||| || |||||| ||||   |||||| |||||  |||  || |||||||||||| ||||||    
T  22356934 gaagatgaaaatgataatagagttgtagagttaatagaagagctgggaaaactaaagcagcttagggaattgagcttga 22356856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 185 - 399
Target Start/End: Complemental strand, 37929837 - 37929623
Alignment:
Q  185 atatgccgaaggagatttgcaagcttagaaagctacgtcattttttagtcgattgtctgtctttgattcaactgaaggatggtattggaggcatgacatc 284  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||| |  |    |||||||||||||  |||||||||||||||||||| |||||||    
T  37929837 atatgccgaaggagatttgcaagcttagaaagctacgttgttttttaggctctgaaatgtctttgattcagttgaaggatggtattggaggcctgacatc 37929738  T
Q  285 cctacaaactctaagtagagtacgcttagatgatggtgaagatgaaaatgataatagggtagtagagctaatcatagagctaggaaagttaacacaactt 384  Q
    |||||||||||||| |  ||||   |||||||||| ||||||||||||||||||||| || ||||||||||||  ||||||||||||| ||| ||| ||     
T  37929737 cctacaaactctaaatgaagtatatttagatgatgatgaagatgaaaatgataatagagttgtagagctaatccaagagctaggaaagctaaaacagcta 37929638  T
Q  385 agggaattgggcttg 399  Q
    |||||||||||||||    
T  37929637 agggaattgggcttg 37929623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 34 - 372
Target Start/End: Complemental strand, 22353044 - 22352704
Alignment:
Q  34 gaaattcctcatgatttgggaagtttgaaccacttgaaattttttgggttcagggtgattggagaaaaatattc---tgaacttccgaaatccattggca 130  Q
    ||||||||| |||||||||||| ||||||||| ||||||| ||  | |||| || ||||||||| || ||||||   || |||||| |||||||||||||    
T  22353044 gaaattcctaatgatttgggaaatttgaaccatttgaaatatt--gagttctggatgattggaggaagatattcaactggacttccaaaatccattggca 22352947  T
Q  131 tgctcgtgaacctagagactttagatttaagatctacaaagtttgagaatcgtaatatgccgaaggagatttgcaagcttagaaagctacgtcatttttt 230  Q
    |||||||||||||||||||||| |||||||||  | ||  ||| |     |||||||||   |||||||||||||||||||||||| |||| ||||||||    
T  22352946 tgctcgtgaacctagagactttggatttaagagttgcactgttcgcattgcgtaatatgttaaaggagatttgcaagcttagaaagttacgccatttttt 22352847  T
Q  231 agtcgattgtctgtctttgattcaactgaaggatggtattggaggcatgacatccctac-aaactctaagtagagtacgcttagatgatggtgaagatga 329  Q
    || | |     |||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||   ||    |||||||| || ||||||||    
T  22352846 aggcaaccaaatgtctttgattcaattgaaagatggtattggaggcatgacatccctacaaaactctaagtgatgtttatttagatgaaggagaagatga 22352747  T
Q  330 aaatgataatagggtagtagagctaatcatagagctaggaaag 372  Q
    |||||| | ||| || |||||||||||   |||||||||||||    
T  22352746 aaatgacagtagagttgtagagctaattgaagagctaggaaag 22352704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 31 - 198
Target Start/End: Complemental strand, 22430402 - 22430235
Alignment:
Q  31 cttgaaattcctcatgatttgggaagtttgaaccacttgaaattttttgggttcagggtgattggagaaaaatattctgaacttccgaaatccattggca 130  Q
    |||||||||||| |||||||||||||||| ||||||||||||| ||||||||||  ||||| ||||   | ||||||| ||||||| |||||||||||||    
T  22430402 cttgaaattcctaatgatttgggaagtttaaaccacttgaaatattttgggttctaggtgaatggaagtagatattctaaacttccaaaatccattggca 22430303  T
Q  131 tgctcgtgaacctagagactttagatttaagatctacaaagtttgagaatcgtaatatgccgaaggag 198  Q
    |||| ||||||||||||||||| |||||||||| || || |||||| |||| |||||||||| |||||    
T  22430302 tgctagtgaacctagagactttggatttaagatatataaggtttgaaaatcataatatgccgcaggag 22430235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 182 - 392
Target Start/End: Complemental strand, 22634542 - 22634332
Alignment:
Q  182 gtaatatgccgaaggagatttgcaagcttagaaagctacgtcattttttagtcgattgtctgtctttgattcaactgaaggatggtattggaggcatgac 281  Q
    |||||||||| ||||||||||||||||||| ||||||||| |||||| ||| | ||    ||||| |||||||  |||||||||||||||||||||||||    
T  22634542 gtaatatgcccaaggagatttgcaagcttaaaaagctacgccattttataggctatcaaatgtctctgattcagttgaaggatggtattggaggcatgac 22634443  T
Q  282 atccctacaaactctaagtagagtacgcttagatgatggtgaagatgaaaatgataatagggtagtagagctaatcatagagctaggaaagttaacacaa 381  Q
    ||||||||||||||||| |   ||    ||||| |||| |||||||||| |||||||||| || |||||| ||||   ||||||||||||| |||  ||     
T  22634442 atccctacaaactctaaatgaggtttatttagacgatgatgaagatgaagatgataatagagtggtagagttaatagaagagctaggaaagctaaagcag 22634343  T
Q  382 cttagggaatt 392  Q
    |||||||||||    
T  22634342 cttagggaatt 22634332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 166
Target Start/End: Complemental strand, 37930094 - 37929959
Alignment:
Q  31 cttgaaattcctcatgatttgggaagtttgaaccacttgaaattttttgggttcagggtgattggagaaaaatattctgaacttccgaaatccattggca 130  Q
    |||||||||| | | ||||| ||||||||||| || ||||||| || || ||||  ||||| |  || || |  ||||| |||||| |||||||||||||    
T  37930094 cttgaaattcttaaagattttggaagtttgaaacaattgaaatattatgcgttcgtggtgaataaagtaagaagttctggacttccaaaatccattggca 37929995  T
Q  131 tgctcgtgaacctagagactttagatttaagatcta 166  Q
    |||||||||||||||||||||| ||||||| |||||    
T  37929994 tgctcgtgaacctagagactttggatttaaaatcta 37929959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 187 - 297
Target Start/End: Complemental strand, 22457577 - 22457467
Alignment:
Q  187 atgccgaaggagatttgcaagcttagaaagctacgtcattttttagtcgattgtctgtctttgattcaactgaaggatggtattggaggcatgacatccc 286  Q
    |||||||| ||||| ||||||||||||||| |||| |||||  ||| | |   | |||||||||||||| | || |||||||| ||||||||||||||||    
T  22457577 atgccgaaagagatatgcaagcttagaaagttacgccatttcctaggctacaatatgtctttgattcaattaaaagatggtatcggaggcatgacatccc 22457478  T
Q  287 tacaaactcta 297  Q
    |||||||||||    
T  22457477 tacaaactcta 22457467  T

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Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 187 - 297
Target Start/End: Complemental strand, 22480558 - 22480448
Alignment:
Q  187 atgccgaaggagatttgcaagcttagaaagctacgtcattttttagtcgattgtctgtctttgattcaactgaaggatggtattggaggcatgacatccc 286  Q
    |||||||| ||||| ||||||||||||||| |||| |||||  ||| | |   | |||||||||||||| | || |||||||| ||||||||||||||||    
T  22480558 atgccgaaagagatatgcaagcttagaaagttacgccatttcctaggctacaatatgtctttgattcaattaaaagatggtatcggaggcatgacatccc 22480459  T
Q  287 tacaaactcta 297  Q
    |||||||||||    
T  22480458 tacaaactcta 22480448  T

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Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 22430213 - 22430160
Alignment:
Q  246 tttgattcaactgaaggatggtattggaggcatgacatccctacaaactctaag 299  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  22430213 tttgattgaattgaaggatggtattggaggcatgacatccctacaaactctaag 22430160  T

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Target: chr3; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 170
Target Start/End: Complemental strand, 22634661 - 22634602
Alignment:
Q  111 acttccgaaatccattggcatgctcgtgaacctagagactttagatttaagatctacaaa 170  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| ||||    
T  22634661 acttccaaaatccattggcatgctcgtgaacctagagactttggatttaaaatctccaaa 22634602  T

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Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 293
Target Start/End: Complemental strand, 30988380 - 30988275
Alignment:
Q  188 tgccgaaggagatttgcaagcttagaaagctacgtcattttttagtcgattgtctgtctttgattcaactgaaggatggtattggaggcatgacatccct 287  Q
    |||| ||||||||| ||||||||||||||||| | ||| || | | |  | | ||||||||||||||  | ||||||||||||||||  |||||||||||    
T  30988380 tgccaaaggagattagcaagcttagaaagctaagacatcttatcggcactggactgtctttgattcagttaaaggatggtattggagagatgacatccct 30988281  T
Q  288 acaaac 293  Q
    ||||||    
T  30988280 acaaac 30988275  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 296
Target Start/End: Original strand, 22180855 - 22180910
Alignment:
Q  241 ctgtctttgattcaactgaaggatggtattggaggcatgacatccctacaaactct 296  Q
    ||||||||||||||| | ||||||||||||||||  ||||  ||||||||||||||    
T  22180855 ctgtctttgattcaattaaaggatggtattggagagatgaagtccctacaaactct 22180910  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 22106161 - 22106213
Alignment:
Q  244 tctttgattcaactgaaggatggtattggaggcatgacatccctacaaactct 296  Q
    |||||||||||| | ||||||||||||||||  ||||  ||||||||||||||    
T  22106161 tctttgattcaattaaaggatggtattggagagatgaagtccctacaaactct 22106213  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 22116535 - 22116587
Alignment:
Q  244 tctttgattcaactgaaggatggtattggaggcatgacatccctacaaactct 296  Q
    |||||||||||| | ||||||||||||||||  ||||  ||||||||||||||    
T  22116535 tctttgattcaattaaaggatggtattggagagatgaagtccctacaaactct 22116587  T

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Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 111 - 297
Target Start/End: Complemental strand, 29604580 - 29604400
Alignment:
Q  111 acttccgaaatccattggcatgctcgtgaacctagagactttagatttaagatctacaaagtttgagaatcgtaatatgccgaaggagatttgcaagctt 210  Q
    ||||| |||||||||| ||||||||| |||||||||||| || ||||||| || ||||| |||  |      |  |||||||||||||||||||||||||    
T  29604580 acttctgaaatccatttgcatgctcgagaacctagagaccttggatttaacatatacaatgttcta------tgctatgccgaaggagatttgcaagctt 29604487  T
Q  211 agaaagctacgtcattttttagtcgattgtctgtctttgattcaactgaaggatggtattggaggcatgacatccctacaaactcta 297  Q
    |||||||| || |||||| ||| |    || |||||| ||||||| ||||||||||| ||||||||||||||| |||||||||||||    
T  29604486 agaaagctgcgccattttctaggcttgagtatgtcttggattcaattgaaggatggtcttggaggcatgacattcctacaaactcta 29604400  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 871800 - 871755
Alignment:
Q  248 tgattcaactgaaggatggtattggaggcatgacatccctacaaac 293  Q
    |||||||| | ||||||||||||||||  |||||||||||||||||    
T  871800 tgattcaattaaaggatggtattggagagatgacatccctacaaac 871755  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 1233077 - 1233032
Alignment:
Q  248 tgattcaactgaaggatggtattggaggcatgacatccctacaaac 293  Q
    |||||||| | ||||||||||||||||  |||||||||||||||||    
T  1233077 tgattcaattaaaggatggtattggagagatgacatccctacaaac 1233032  T

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