View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18948_low_16 (Length: 346)
Name: NF18948_low_16
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18948_low_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 346
Target Start/End: Original strand, 33168249 - 33168568
Alignment:
| Q |
19 |
cgttcaactacttgcaataaaagacgacggtaaaacaattcctcatttcttcaatatagataaatggcgtttacctgttgtaatcaaaacttatttgtca |
118 |
Q |
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| T |
33168249 |
cgttcaactacttgcaataaaagacgacggtaaaacaaatcctcatttcttcaatacagataaatggcgtttacctgttgtaatcaaaacttatttgtca |
33168348 |
T |
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| Q |
119 |
taattattttcaaatttcaagcttggagcatgataacttacttcaaatgtctcttaacaatggattttgaatttgagttccatttgcatttggcctatat |
218 |
Q |
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| T |
33168349 |
taattattttcaaatttcaagcttggagcatgacaacttacttcaaatgtctcttaacaatggattttgaatttgagttccatttgcatttggcctatat |
33168448 |
T |
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| Q |
219 |
ttgtgattatcaatactagacactaatagattgatagattgatttgaaaagtggagaaaagtagtttatactcggttaaaagtgttcgctgactttgtgt |
318 |
Q |
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| T |
33168449 |
ttgtgattatcaatactagacactaatagattgata--------tgaaaagtggagaaaagtagtttatactcggttaaaagtgttcgctgactttgtgt |
33168540 |
T |
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| Q |
319 |
gaaggaattggttgacacatcccatatt |
346 |
Q |
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| T |
33168541 |
gaaggaattggttgacacatcccatatt |
33168568 |
T |
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