View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18948_low_17 (Length: 337)
Name: NF18948_low_17
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18948_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 10 - 324
Target Start/End: Complemental strand, 7033652 - 7033338
Alignment:
| Q |
10 |
catcatcactattatgaaagacaaagctacgaagagacaagctggttaatgccggcaaatttagaaaatttggaaataatgtattaaagccaagggaaag |
109 |
Q |
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| T |
7033652 |
catcatcactattatgaaagacaaagctacgaagagacaagctggttaatgccggcaaatttagaaaatttggaaataatgtattaaagccaagggaaag |
7033553 |
T |
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| Q |
110 |
tttaagagaagttaaagtgttacatgaaaagaagcatggaggaaagcgttgaaaatcagcatcaacgctgatttgtaactgttggacactgtgtgaaaca |
209 |
Q |
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| T |
7033552 |
tttaagagaagttaaagtgttacatgaaaagaagcatggaggaaagcattgaaaatcagcatcaacgctgatttgtaactgttggacactgtgtgaaaca |
7033453 |
T |
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| Q |
210 |
gcatattttacaatcttttttagtaggtaagcctccacaatactcgcgcgatgaaaatcaagggcctgcagtgcggttgagtcatcgcgatgagacaaaa |
309 |
Q |
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| T |
7033452 |
gcatattttacaatcttttttagtaggtaagcctccacaatactcgcgcgatgagaatcaagggcctgcagtgcggttgagtcatcgcgatgagacaaaa |
7033353 |
T |
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| Q |
310 |
catgagacacaaatt |
324 |
Q |
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| T |
7033352 |
catgagacacaaatt |
7033338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 13492231 - 13492181
Alignment:
| Q |
179 |
gatttgtaactgttggacactgtgtgaaacagcatattttacaatcttttt |
229 |
Q |
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| T |
13492231 |
gatttgtaactgttggacattgtgcgaaactgcatattttaaaatcctttt |
13492181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 7175106 - 7175156
Alignment:
| Q |
105 |
gaaagtttaagagaagttaaagtgttacatgaaaagaagcatggaggaaag |
155 |
Q |
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| T |
7175106 |
gaaaggttaagagatgttaaagtgtgacatgaaaagaagcttggcggaaag |
7175156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 32413888 - 32413847
Alignment:
| Q |
199 |
tgtgtgaaacagcatattttacaatcttttttagtaggtaag |
240 |
Q |
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| T |
32413888 |
tgtgcgaaacagcatattttacaatttttttgagtaggtaag |
32413847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 43874951 - 43874991
Alignment:
| Q |
105 |
gaaagtttaagagaagttaaagtgttacatgaaaagaagca |
145 |
Q |
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| T |
43874951 |
gaaagattaagagaagttaatgtgtgacatgaaaagaagca |
43874991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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