View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18948_low_18 (Length: 330)
Name: NF18948_low_18
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18948_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 45595868 - 45595564
Alignment:
| Q |
11 |
atgaaccaaacttacagagagaatactacttattggaaaagaaagcacatcaatccaaaagaagagagggccaaagggtattgtcccttaactccaaagg |
110 |
Q |
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| T |
45595868 |
atgaaccaaacttacagagagaatactacttattggaaaagaaagcacatcgatccaaaagaagagagggccaaagggtattgtcccttaactccaaagg |
45595769 |
T |
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| Q |
111 |
aagttggaattttccttagtgctcttggataccctgcaaagactccaatatatattgctgcaggggagatatatgggggtgaatcccatatgactgaatt |
210 |
Q |
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| T |
45595768 |
aagttggaattttccttagtgctcttggataccctgcaaagactccaatatatattgctgcaggggagatatatgggggtgaatcccatatgactgaatt |
45595669 |
T |
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| Q |
211 |
gcgatcacgctatccctttttaatgagcaaggttagaaattacaagactttattgttgtttcttggtgaatgaagattgataaagcattgtttgaactgg |
310 |
Q |
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| T |
45595668 |
gcgatcacgctatccctttttaatgagcaaggttagaaattacaagactttattgttgtttcttggtgaatgaagattgataaagcattgtttgaactgg |
45595569 |
T |
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| Q |
311 |
tttct |
315 |
Q |
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| T |
45595568 |
tttct |
45595564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 70 - 243
Target Start/End: Complemental strand, 27151508 - 27151335
Alignment:
| Q |
70 |
agaagagagggccaaagggtattgtcccttaactccaaaggaagttggaattttccttagtgctcttggataccctgcaaagactccaatatatattgct |
169 |
Q |
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| T |
27151508 |
agaacagaggtccaaagggttttgccccttaacaccaaaggaagttggaatttttcttactgctcttggatatccatcaaagacgccgatatatattgct |
27151409 |
T |
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| Q |
170 |
gcaggggagatatatgggggtgaatcccatatgactgaattgcgatcacgctatccctttttaatgagcaaggt |
243 |
Q |
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| T |
27151408 |
gctggagagatttatgggggtgagtcccatatggctgaactgcgatcccgttatccattgttaatgagcaaggt |
27151335 |
T |
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