View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18948_low_19 (Length: 303)

Name: NF18948_low_19
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18948_low_19
NF18948_low_19
[»] chr1 (1 HSPs)
chr1 (20-294)||(11116034-11116296)
[»] scaffold0691 (1 HSPs)
scaffold0691 (18-294)||(4420-4696)
[»] chr3 (11 HSPs)
chr3 (22-294)||(2836875-2837147)
chr3 (24-294)||(2750589-2750859)
chr3 (22-294)||(2854085-2854357)
chr3 (22-294)||(5414479-5414751)
chr3 (21-294)||(2770654-2770927)
chr3 (21-294)||(2791908-2792181)
chr3 (30-295)||(2820153-2820418)
chr3 (22-294)||(2808861-2809133)
chr3 (17-294)||(2760808-2761085)
chr3 (26-286)||(2798963-2799223)
chr3 (153-222)||(3355769-3355838)
[»] chr5 (1 HSPs)
chr5 (104-240)||(31681562-31681698)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 294
Target Start/End: Original strand, 11116034 - 11116296
Alignment:
20 ccttatcttaacaagacactcaagatttggaatccaatcaggcaacttctctagtctagctttcaaatgaagtcgccgaagtttgggtggggatgacaca 119  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||                
11116034 ccttatctaaacaatacactcaagatttggaatccaatcaggcaacttatcaagtctagctttcaaatgaagtcgccgaagtttgggt------------ 11116121  T
120 aagttcaagtcaacaatttcatcctctgcaattgcagtgatattaagtgattcaaggtgttgcatttcttctattgccgcacttaatgcattcccatgtt 219  Q
    ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| || |||    
11116122 aaggtcaagtcaataatttcatcctctgcaattgcagtgatattaagtgattcaaggtgttgcatctcttctattgcagcacttaatgcattcacaagtt 11116221  T
220 ctctttttacacgccttaaacctaactttcttaactgccttaacattttcatctcttcaataagatctactcccc 294  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
11116222 ctcttttcacacgccttaaacctaactttcttaactgccttaacattttcatctcttctataagatctactcccc 11116296  T

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Target: scaffold0691 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 4420 - 4696
Alignment:
18 aaccttatcttaacaagacactcaagatttggaatccaatcaggcaacttctctagtctagctttcaaatgaagtcgccgaagtttgggtggggatgaca 117  Q
    |||||||||||||||||| |||| || ||||||||||||||||| ||| |||||| ||| |||||||||||||||||| |||||||||||||||||||||    
4420 aaccttatcttaacaagaaactcgagttttggaatccaatcaggtaacctctctaatctggctttcaaatgaagtcgctgaagtttgggtggggatgaca 4519  T
118 caaagttcaagtcaacaatttcatcctctgcaattgcagtgatattaagtgattcaaggtgttgcatttcttctattgccgcacttaatgcattcccatg 217  Q
    ||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||  | |||    
4520 caaagtttaagtcaataatttcatcctctgctattgcagtgatattaagtgattcaaggtgttgcatctctactaatgccgcacttaaggcatggctatg 4619  T
218 ttctctttttacacgccttaaacctaactttcttaactgccttaacattttcatctcttcaataagatctactcccc 294  Q
    ||||||| ||||| |||||||||||||||| |||||||||||||  ||||||||||||||||| |||||||||||||    
4620 ttctcttcttacatgccttaaacctaacttccttaactgccttagtattttcatctcttcaatgagatctactcccc 4696  T

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Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 22 - 294
Target Start/End: Original strand, 2836875 - 2837147
Alignment:
22 ttatcttaacaagacactcaagatttggaatccaatcaggcaacttctctagtctagctttcaaatgaagtcgccgaagtttgggtggggatgacacaaa 121  Q
    |||||| |||||||| |||||| || | || ||||| ||||||||||| ||||||||||||||||||||| |||| |||||| ||||||| |||||||||    
2836875 ttatctcaacaagaccctcaagtttggaaacccaattaggcaacttctgtagtctagctttcaaatgaagccgcctaagttttggtggggttgacacaaa 2836974  T
122 gttcaagtcaacaatttcatcctctgca-attgcagtgatattaagtgattcaaggtgttgcatttcttctattgccgcacttaatgcattcccatgttc 220  Q
    ||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| ||||| | ||||| ||| |||||||| ||||||||||||||    
2836975 gttcaagtcaataatttcatcctc-gcatattgcagtgatattaagtgattcaaggtgctgcatcttttctactgctgcacttaaggcattcccatgttc 2837073  T
221 tctttttacacgccttaaacctaactttcttaactgccttaacattttcatctcttcaataagatctactcccc 294  Q
    |||||||||| |||||||||||||||| | ||| ||||||||||||| ||||||||||||||||||||||||||    
2837074 tctttttacatgccttaaacctaacttccataattgccttaacatttccatctcttcaataagatctactcccc 2837147  T

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Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 24 - 294
Target Start/End: Complemental strand, 2750859 - 2750589
Alignment:
24 atcttaacaagacactcaagatttggaatccaatcaggcaacttctctagtctagctttcaaatgaagtcgccgaagtttgggtggggatgacacaaagt 123  Q
    |||| ||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||| || ||  ||||||| ||||||| |||| ||||||    
2750859 atctgaacaagacactcaaattttggaatccaatcaggaaacttctctagtctagctttcaaatggagccgttgaagttttggtggggttgacgcaaagt 2750760  T
124 tcaagtcaacaatttcatcctctgcaattgcagtgatattaagtgattcaaggtgttgcatttcttctattgccgcacttaatgcattcccatgttctct 223  Q
    | ||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| |||| || ||| |||||||  |||||||||||||| ||    
2750759 ttaagtcaataatttcatcctcttctattgcagtgatattaagtgattcaaggtgttgcatctcttgtactgcagcacttatggcattcccatgttccct 2750660  T
224 ttttacacgccttaaacctaactttcttaactgccttaacattttcatctcttcaataagatctactcccc 294  Q
    | ||||| || ||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||    
2750659 tcttacatgctttaaacctaacttccttaactgccttagcattttcatctcttcaatgagatctactcccc 2750589  T

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Target: chr3; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 22 - 294
Target Start/End: Original strand, 2854085 - 2854357
Alignment:
22 ttatcttaacaagacactcaagatttggaatccaatcaggcaacttctctagtctagctttcaaatgaagtcgccgaagtttgggtggggatgacacaaa 121  Q
    |||||| ||||||| |||| |  ||||| ||||| ||||||||  | |||||| |||||||||||||||| |||| |||||| ||||||| |||| ||||    
2854085 ttatctcaacaagatactccaattttgggatccattcaggcaatgtatctagtttagctttcaaatgaagccgcctaagttttggtggggttgacgcaaa 2854184  T
122 gttcaagtcaacaatttcatcctctgcaattgcagtgatattaagtgattcaaggtgttgcatttcttctattgccgcacttaatgcattcccatgttct 221  Q
    ||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||  || | ||||||||||    
2854185 gtttaagtcaataatttcatcctctgctattgcagtgatattaagtgattcaaggtgttgcatctcttctactgcagcacttatggcctccccatgttct 2854284  T
222 ctttttacacgccttaaacctaactttcttaactgccttaacattttcatctcttcaataagatctactcccc 294  Q
    ||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| ||||    
2854285 cttcttacatgccttaaacctaaccttcttaactgccttaacattttcatctcttgaatgagatctacccccc 2854357  T

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Target: chr3; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 22 - 294
Target Start/End: Complemental strand, 5414751 - 5414479
Alignment:
22 ttatcttaacaagacactcaagatttggaatccaatcaggcaacttctctagtctagctttcaaatgaagtcgccgaagtttgggtggggatgacacaaa 121  Q
    |||||| ||||||||| ||||  |||| |||||||||||||||||||||||||||||||||||||||||| || |||||||| || |||| |||||||||    
5414751 ttatctgaacaagacattcaaactttgaaatccaatcaggcaacttctctagtctagctttcaaatgaagccgacgaagttttggcggggttgacacaaa 5414652  T
122 gttcaagtcaacaatttcatcctctgcaattgcagtgatattaagtgattcaaggtgttgcatttcttctattgccgcacttaatgcattcccatgttct 221  Q
    ||| ||||||| |||||||||||| || |||||||||||||||||||||||||||| |||||| ||| ||| |||| ||||||  |||||||| ||||||    
5414651 gtttaagtcaataatttcatcctcggctattgcagtgatattaagtgattcaaggtattgcatctctactactgccacacttatggcattcccgtgttct 5414552  T
222 ctttttacacgccttaaacctaactttcttaactgccttaacattttcatctcttcaataagatctactcccc 294  Q
    ||| ||||| || ||||||| ||||| ||||||||| | | ||| |||||||||||||| ||||| |||||||    
5414551 cttcttacatgctttaaacccaacttccttaactgcttaagcatcttcatctcttcaatgagatccactcccc 5414479  T

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Target: chr3; HSP #5
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 21 - 294
Target Start/End: Complemental strand, 2770927 - 2770654
Alignment:
21 cttatcttaacaagacactcaagatttggaatccaatcaggcaacttctctagtctagctttcaaatgaagtcgccgaagtttgggtggggatgacacaa 120  Q
    |||| ||||||||| |||||||| | ||||||||||||||||||||||| |||||||||||||||||| || ||| |||||| |||||||||||| | |     
2770927 cttaccttaacaaggcactcaagttctggaatccaatcaggcaacttctgtagtctagctttcaaatgtagccgcagaagttggggtggggatgatatac 2770828  T
121 agttcaagtcaacaatttcatcctctgcaattgcagtgatattaagtgattcaaggtgttgcatttcttctattgccgcacttaatgcattcccatgttc 220  Q
    ||||||||||||  ||||||||||| |  ||||||  |||||||||   ||||||||||| ||||||| ||| ||| |||| ||| || |||||||||||    
2770827 agttcaagtcaagtatttcatcctcagatattgcacagatattaagatgttcaaggtgtttcatttctgctactgcagcacataaggcgttcccatgttc 2770728  T
221 tctttttacacgccttaaacctaactttcttaactgccttaacattttcatctcttcaataagatctactcccc 294  Q
    || | |||| |||||||| |||||| | ||||||||||||| |||||||||||||| ||| |||| ||| ||||    
2770727 tcgtcttactcgccttaagcctaacctccttaactgccttagcattttcatctcttgaatgagatatacgcccc 2770654  T

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Target: chr3; HSP #6
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 21 - 294
Target Start/End: Complemental strand, 2792181 - 2791908
Alignment:
21 cttatcttaacaagacactcaagatttggaatccaatcaggcaacttctctagtctagctttcaaatgaagtcgccgaagtttgggtggggatgacacaa 120  Q
    |||| ||||||||| |||||||| | ||||||||||||||||||||| | |||||||||||||||||| || ||| |||||| ||| |||||||| | |     
2792181 cttaccttaacaaggcactcaagttctggaatccaatcaggcaacttttgtagtctagctttcaaatgtagccgcagaagttggggaggggatgatatac 2792082  T
121 agttcaagtcaacaatttcatcctctgcaattgcagtgatattaagtgattcaaggtgttgcatttcttctattgccgcacttaatgcattcccatgttc 220  Q
    |||||||||| |  ||||||||||| |  ||||||| |||||||||  |||||||||||| ||||||| ||| ||| |||| ||| ||||||||||||||    
2792081 agttcaagtcgatgatttcatcctcagatattgcagagatattaagatattcaaggtgtttcatttctgctactgcagcacataaggcattcccatgttc 2791982  T
221 tctttttacacgccttaaacctaactttcttaactgccttaacattttcatctcttcaataagatctactcccc 294  Q
    || | ||||  | ||||| |||||| | ||||||||||||| |||||||||||||| ||| |||||||||||||    
2791981 tcgtcttacttgacttaagcctaacctccttaactgccttagcattttcatctcttgaatgagatctactcccc 2791908  T

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Target: chr3; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 30 - 295
Target Start/End: Complemental strand, 2820418 - 2820153
Alignment:
30 acaagacactcaagatttggaatccaatcaggcaacttctctagtctagctttcaaatgaagtcgccgaagtttgggtggggatgacacaaagttcaagt 129  Q
    |||||| ||||||| ||||||||||||||||||||  | |||| ||| |||||||||||||| ||| |||||| | ||||  |||| ||||| |||||||    
2820418 acaagagactcaagttttggaatccaatcaggcaatgtatctaatctggctttcaaatgaagccgctgaagttggtgtggatatgagacaaaattcaagt 2820319  T
130 caacaatttcatcctctgcaattgcagtgatattaagtgattcaaggtgttgcatttcttctattgccgcacttaatgcattcccatgttctctttttac 229  Q
     ||   ||||||||||  |||| | ||||||||||||   ||||||||||| ||||||| ||||  | |||||||| |||| ||||||||||||| ||||    
2820318 taatggtttcatcctcaccaatggtagtgatattaagatcttcaaggtgtttcatttctactataacagcacttaaggcatccccatgttctcttcttac 2820219  T
230 acgccttaaacctaactttcttaactgccttaacattttcatctcttcaataagatctactcccct 295  Q
    | |||||||||||||| | ||||||||| |||||||||||||||| | ||| ||||| ||||||||    
2820218 atgccttaaacctaacctccttaactgctttaacattttcatctcgttaatgagatcgactcccct 2820153  T

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Target: chr3; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 22 - 294
Target Start/End: Complemental strand, 2809133 - 2808861
Alignment:
22 ttatcttaacaagacactcaagatttggaatccaatcaggcaacttctctagtctagctttcaaatgaagtcgccgaagtttgggtggggatgacacaaa 121  Q
    |||||| ||||||| |||| || ||||| ||||| ||||||||    |||||| ||||||||||||||||||| ||||| | |||||| || || || ||    
2809133 ttatctcaacaagatactccagttttgggatccattcaggcaatgaatctagtttagctttcaaatgaagtcgtcgaagctggggtggagacgagacgaa 2809034  T
122 gttcaagtcaacaatttcatcctctgcaattgcagtgatattaagtgattcaaggtgttgcatttcttctattgccgcacttaatgcattcccatgttct 221  Q
    |||||||| ||   ||||||| ||  | |||| ||||||||||||   ||||||||||| ||||||| ||||||| |||| ||| |||||||||||||||    
2809033 gttcaagttaattgtttcatcttcacctattgtagtgatattaagattttcaaggtgtttcatttctactattgcagcacataaggcattcccatgttct 2808934  T
222 ctttttacacgccttaaacctaactttcttaactgccttaacattttcatctcttcaataagatctactcccc 294  Q
    ||| | ||| |||||||||||||| | |||||||||| ||||||||||||||||| ||| |||||||| ||||    
2808933 cttctcacatgccttaaacctaacctccttaactgccctaacattttcatctcttgaatgagatctacccccc 2808861  T

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Target: chr3; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 294
Target Start/End: Complemental strand, 2761085 - 2760808
Alignment:
17 caaccttatcttaacaagacactcaagatttggaatccaatcaggcaacttctctagtctagctttcaaatgaagtcgcc-gaagtttgggtggggatga 115  Q
    |||| |||||| ||||||| ||||||| ||||||||||| ||||||||  | |||||| |||||||||||||||| |||| |||||| ||| || |||||    
2761085 caactttatctcaacaagatactcaagttttggaatccattcaggcaatgtatctagtttagctttcaaatgaag-cgcctgaagttggggcggagatga 2760987  T
116 cacaaagttcaagtcaacaatttcatcctctgcaattgcagtgatattaagtgattcaaggtgttgcatttcttctattgccgcacttaatgcattccca 215  Q
     ||||| ||||||| ||   ||||||||||  |||||| ||||||||||||   ||||||||||| || |||| ||||  | |||||||  || | ||||    
2760986 gacaaaattcaagttaatgctttcatcctcaccaattgtagtgatattaagatcttcaaggtgtttcaattctactataacagcacttatggcctcccca 2760887  T
216 tgttctctttttacacgccttaaacctaactttcttaactgccttaacattttcatctcttcaataagatctactcccc 294  Q
    || |||||| ||||| |||||||||||||| |||||||||| ||||||||||||||||||| ||| ||||| |||||||    
2760886 tgctctcttcttacatgccttaaacctaaccttcttaactgacttaacattttcatctcttgaatgagatcaactcccc 2760808  T

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Target: chr3; HSP #10
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 26 - 286
Target Start/End: Complemental strand, 2799223 - 2798963
Alignment:
26 cttaacaagacactcaagatttggaatccaatcaggcaacttctctagtctagctttcaaatgaagtcgccgaagtttgggtggggatgacacaaagttc 125  Q
    |||||| ||||||||||| |||| ||||||||| |||||||||| ||||||| |||||||||| || ||| |||||| |||||||||||| | |||||||    
2799223 cttaacgagacactcaagttttgcaatccaatcgggcaacttctgtagtctacctttcaaatgtagccgctgaagttggggtggggatgatataaagttc 2799124  T
126 aagtcaacaatttcatcctctgcaattgcagtgatattaagtgattcaaggtgttgcatttcttctattgccgcacttaatgcattcccatgttctcttt 225  Q
    | ||||| |||||||||||| |  ||| | | |||||| ||   ||||||||||  ||||||| |||  || |||||||| | |||||||||||||| |     
2799123 aggtcaataatttcatcctccgatattactgagatattcagattttcaaggtgtgtcatttctgctacagcagcacttaaggaattcccatgttctcctc 2799024  T
226 ttacacgccttaaacctaactttcttaactgccttaacattttcatctcttcaataagatc 286  Q
    | ||| ||||||||||| |  | ||||| | ||||| ||||||||| |||| ||| |||||    
2799023 tgacatgccttaaacctgaactccttaaattccttagcattttcatttcttgaatgagatc 2798963  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 3355769 - 3355838
Alignment:
153 gcagtgatattaagtgattcaaggtgttgcatttcttctattgccgcacttaatgcattcccatgttctc 222  Q
    |||||||| || || ||||||||||||| ||| |||| |||||| |||| ||||||||| |||| |||||    
3355769 gcagtgatgtttagagattcaaggtgtttcatctcttgtattgcagcacataatgcatttccatattctc 3355838  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 240
Target Start/End: Complemental strand, 31681698 - 31681562
Alignment:
104 gggtggggatgacacaaagttcaagtcaacaatttcatcctctgcaattgcagtgatattaagtgattcaaggtgttgcatttcttctattgccgcactt 203  Q
    |||||| ||||| ||| ||||||| | |||  ||||||| ||  | |||||||||||||||||   ||||||||||| | ||||| | ||||| |||| |    
31681698 gggtggcgatgagacagagttcaaattaactgtttcatcttcaactattgcagtgatattaagattttcaaggtgtttcgtttctacgattgctgcacat 31681599  T
204 aatgcattcccatgttctctttttacacgccttaaac 240  Q
    |  |||||||| ||||||||| ||||| |||||||||    
31681598 acggcattcccgtgttctcttcttacatgccttaaac 31681562  T

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