View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18948_low_23 (Length: 281)
Name: NF18948_low_23
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18948_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 37789684 - 37789420
Alignment:
| Q |
1 |
gatgaccccacaacacattgcatgacaaggaagaacaatttcaaaacgaacactcatatttagacacaaaataacacggtataaaatacacctagttttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37789684 |
gatgaccccacaacacattgcatgacaaggaagaacaatttcaaaacgaacactcatatttagacacaaaatgacacggtataaaatacacctagttttt |
37789585 |
T |
|
| Q |
101 |
agtgttggttggagaaaaagttagtaaaagaaccaaaaattacatgaatgacatcagacagaataccgtgttggtgtcaaattataatgtctaagaaacg |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37789584 |
agtgttggttggagaaaaagttaataaaagaaccaaaaattacatgaatgacatcagacagaataccgtgttggtgtcaaattataatgtctaagaaacg |
37789485 |
T |
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| Q |
201 |
tttacgtttcaaaattaatatcaaactcatataagtcacgagcaaagcaaagtatagcataaaag |
265 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37789484 |
tttacgtttcaaaattagtatcaaactcatataagtcacgagcaaagcaaagtatagcataaaag |
37789420 |
T |
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