View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18948_low_28 (Length: 246)

Name: NF18948_low_28
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18948_low_28
NF18948_low_28
[»] chr4 (2 HSPs)
chr4 (1-232)||(30518120-30518350)
chr4 (65-185)||(22085524-22085644)
[»] chr2 (4 HSPs)
chr2 (17-204)||(38895856-38896043)
chr2 (1-203)||(42898222-42898424)
chr2 (46-104)||(40040758-40040816)
chr2 (17-89)||(5435530-5435602)
[»] chr1 (8 HSPs)
chr1 (4-203)||(28496106-28496305)
chr1 (4-204)||(4160304-4160504)
chr1 (4-203)||(36989267-36989466)
chr1 (4-203)||(12804511-12804710)
chr1 (4-204)||(12774864-12775064)
chr1 (65-185)||(31644076-31644196)
chr1 (13-204)||(50788818-50789009)
chr1 (41-185)||(42287081-42287225)
[»] chr8 (2 HSPs)
chr8 (1-188)||(33186659-33186846)
chr8 (1-204)||(5788722-5788925)
[»] chr7 (2 HSPs)
chr7 (73-203)||(44150800-44150930)
chr7 (65-204)||(40749378-40749517)
[»] chr5 (1 HSPs)
chr5 (63-147)||(1983162-1983246)
[»] chr3 (4 HSPs)
chr3 (7-98)||(52248460-52248551)
chr3 (17-95)||(46987818-46987896)
chr3 (99-147)||(12106124-12106172)
chr3 (99-147)||(46987775-46987823)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 30518350 - 30518120
Alignment:
Q  1 acttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30518350 acttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgaga 30518251  T
Q  101 agtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30518250 agtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaag 30518151  T
Q  201 gtaaactaactgcctatccatccatccctatg 232  Q
    || || |||||||||||||||||||| |||||    
T  30518150 gt-aattaactgcctatccatccatctctatg 30518120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 22085644 - 22085524
Alignment:
Q  65 gtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactag 164  Q
    ||||||| |||||||| ||||||||||||||||| ||||| || ||    ||||| ||||| || ||||||||||||||    || |  ||||| |||||    
T  22085644 gtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactag 22085545  T
Q  165 agaatacaaatgtgactgtgg 185  Q
    ||| ||||||||||| |||||    
T  22085544 agagtacaaatgtgattgtgg 22085524  T

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Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 38896043 - 38895856
Alignment:
Q  17 atccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgtta 116  Q
    |||||||||||||  | || || |||||||||||||| |||||||||||||| || || ||||| ||||||||||||||||||||||||||||||  |||    
T  38896043 atccttcaagggctttgggagatttaactgggataaagaagcacttttgtaggaaacacggtgagaagaagtggaagtgtgagaagtgctcaaaatttta 38895944  T
Q  117 tgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggtaa 204  Q
    ||||||||| || ||||||||||| |||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  38895943 tgctgttcaatcggattggaaagcacactcaaagacttgtggtactagagaatacaaatgtgattgtggcactatcttttcaaggtaa 38895856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 42898222 - 42898424
Alignment:
Q  1 acttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgaga 100  Q
    |||||||| |||||||| || ||||| ||  | || ||| ||||||| || || |||||||| || |||||||| ||||| ||||||||||| ||||| |    
T  42898222 acttgtgtgcaccatgacccatcaagagccttgggggacctaactggtatcaagaagcacttctgcagaaagcacggtgagaagaagtggaaatgtgaca 42898321  T
Q  101 agtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaag 200  Q
    ||||||| ||    ||||| ||||| ||||| |||||||||||||| ||||| ||||| || |||||||||| |||||||||||||||  |||| |||||    
T  42898322 agtgctctaagaagtatgcagttcaatcagactggaaagctcactccaaaacctgtggcacaagagaatacagatgtgactgtggaaccctcttctcaag 42898421  T
Q  201 gta 203  Q
    |||    
T  42898422 gta 42898424  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 40040758 - 40040816
Alignment:
Q  46 gggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtg 104  Q
    |||||||||||||||||| |||||||||| ||||| ||||||||||||||||| |||||    
T  40040758 gggataaaaaagcactttagtagaaagcacggtgagaagaagtggaagtgtgataagtg 40040816  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 5435602 - 5435530
Alignment:
Q  17 atccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtg 89  Q
    |||||||||||||  | || || ||||| |||||||| |||||||||||||| ||||| ||||| ||||||||    
T  5435602 atccttcaagggctttgggagatttaacagggataaagaagcacttttgtaggaagcacggtgagaagaagtg 5435530  T

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Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 203
Target Start/End: Complemental strand, 28496305 - 28496106
Alignment:
Q  4 tgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagt 103  Q
    |||||||||||||| |||||||| |||||||||||| | || || ||||||||||||||| |||||||||| ||||| ||||||||||| ||||| || |    
T  28496305 tgtgtccaccatgacccttcaagagcacttggtgacctcacaggtataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaat 28496206  T
Q  104 gctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggta 203  Q
    | || |||   ||||| || || || ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||| ||  |||| ||||||||    
T  28496205 gttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcaccctcttctcaaggta 28496106  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 4160304 - 4160504
Alignment:
Q  4 tgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagt 103  Q
    ||||| |||||||| ||||||||||||||||||||| ||||||| || || ||||||||||  || ||||| ||||| |||||||||||||||||||| |    
T  4160304 tgtgttcaccatgacccttcaagggcacttggtgacctaactggaatcaagaagcactttttcaggaagcacggtgagaagaagtggaagtgtgagaaat 4160403  T
Q  104 gctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggta 203  Q
    | || ||||| ||||| |||||||| |||||||||||||| || ||||  ||||| |||| ||| || || ||||||||||||||  |||| ||||||||    
T  4160404 gttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtgtgactgtggaaccctcttctcaaggta 4160503  T
Q  204 a 204  Q
    |    
T  4160504 a 4160504  T

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Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 36989267 - 36989466
Alignment:
Q  4 tgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagt 103  Q
    ||||| |||||| | ||| |||| |||||||||||  | ||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| ||||    
T  36989267 tgtgtacaccataaccctgcaagagcacttggtgatcttactggaattaaaaagcacttttgtagaaagcatggtgagaaaaagtggaaatgtgataagt 36989366  T
Q  104 gctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggta 203  Q
    | || ||    ||||||||||| || |||||||||||||| || |||| ||||||||| || ||||||||||||||||||||||| |||||||| |||||    
T  36989367 gttctaagaaatatgctgttcaatctgattggaaagctcattccaaaatatgtggtacaagggaatacaaatgtgactgtggaaccatcttttccaggta 36989466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 203
Target Start/End: Complemental strand, 12804710 - 12804511
Alignment:
Q  4 tgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagt 103  Q
    ||||| |||||||| ||||||||||| ||||||||| | ||||| || || |||||||||| ||||||||||||||| || |||||||| ||||| ||||    
T  12804710 tgtgttcaccatgacccttcaagggctcttggtgacctcactggaattaagaagcacttttctagaaagcatggtgagaaaaagtggaaatgtgaaaagt 12804611  T
Q  104 gctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggta 203  Q
    | || ||    ||||||||||| || |||||||||||||| || || || ||||||||||| || || | |||||||||||| ||| |||| ||||||||    
T  12804610 gttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactagggagtatagatgtgactgtggcactctcttctcaaggta 12804511  T

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Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 12774864 - 12775064
Alignment:
Q  4 tgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagt 103  Q
    ||||| |||||||| ||||||||||| ||||||||| | ||||| || || || |||| || ||||||||||||||| || || ||||||||||| ||||    
T  12774864 tgtgttcaccatgacccttcaagggctcttggtgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaatggaagtgtgaaaagt 12774963  T
Q  104 gctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggta 203  Q
    | || ||    ||||||||||| || |||||||||||||| || ||||| ||||||||||  || || | |||||||||||| ||| |||| || |||||    
T  12774964 gttctaagaagtatgctgttcaatctgattggaaagctcattctaaaacttgtggtactaaggagtatagatgtgactgtggcactctcttctccaggta 12775063  T
Q  204 a 204  Q
    |    
T  12775064 a 12775064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 31644196 - 31644076
Alignment:
Q  65 gtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactag 164  Q
    ||||||| |||||||| || || ||||| ||||| |||||||||||    ||||||||||| || ||||||||||||||||| ||||| ||||||||| |    
T  31644196 gtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactcg 31644097  T
Q  165 agaatacaaatgtgactgtgg 185  Q
    |||||| |||||||| |||||    
T  31644096 agaatataaatgtgattgtgg 31644076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 50789009 - 50788818
Alignment:
Q  13 catgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaac 112  Q
    ||||| ||||||||||||||||||||| | |||||||| || || ||||  | | | || |||||||| ||||| ||||||||||| |||||||| ||      
T  50789009 catgacccttcaagggcacttggtgacctcactgggattaagaaacactactctcgcaaacatggtgagaagaaatggaagtgtgataagtgctctaaga 50788910  T
Q  113 gttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggtaa 204  Q
      ||||||||||| || |||||||| || || || || || ||||| || |||||||| |  ||||||||||| ||| |||| || ||||||    
T  50788909 agtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatataggtgtgactgtggcactctcttctccaggtaa 50788818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 185
Target Start/End: Original strand, 42287081 - 42287225
Alignment:
Q  41 taactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagc 140  Q
    ||||||| || |||||||| || | | | ||||| ||||| ||||||||||| ||||| || ||||||||    ||||||||||| || || ||||||||    
T  42287081 taactggaattaaaaagcatttctctcgtaagcacggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgactggaaagc 42287180  T
Q  141 tcactcaaaaacatgtggtactagagaatacaaatgtgactgtgg 185  Q
     || || || || ||||||||||||||||| | |||||| |||||    
T  42287181 acattctaagacttgtggtactagagaatatagatgtgattgtgg 42287225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 33186659 - 33186846
Alignment:
Q  1 acttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgaga 100  Q
    |||||||| || ||||||||||| || ||  | ||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||    
T  33186659 acttgtgttcatcatgatccttctagagctttaggtgatttaactgggataaaaaagcacttttgtagaaaacatggtgagaaaaagtggaaatgtgaga 33186758  T
Q  101 agtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaac 188  Q
    | || || ||    ||||||||||| || ||||||||||||||||| |||   |||||| ||||||| || |||||||| ||||||||    
T  33186759 aatgttctaagaaatatgctgttcaatctgattggaaagctcactctaaagtttgtggttctagagagtataaatgtgattgtggaac 33186846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 5788925 - 5788722
Alignment:
Q  1 acttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgaga 100  Q
    |||||||| || |||||||| ||||| ||| | || || || ||||| || || || |||||||  |||||||||||||| ||||||||||| ||||| |    
T  5788925 acttgtgtgcatcatgatccatcaagagcattaggggatttgactggaatcaagaaacacttttccagaaagcatggtgagaagaagtggaaatgtgaaa 5788826  T
Q  101 agtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaag 200  Q
    |||| |||||    ||||||||||| || |||||||||||||| || ||||| ||||| ||||||||||| | |||||||||||||||  |||| |||||    
T  5788825 agtgttcaaagaaatatgctgttcaatctgattggaaagctcattccaaaacttgtggcactagagaatatagatgtgactgtggaaccctcttctcaag 5788726  T
Q  201 gtaa 204  Q
    ||||    
T  5788725 gtaa 5788722  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 73 - 203
Target Start/End: Complemental strand, 44150930 - 44150800
Alignment:
Q  73 catggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaataca 172  Q
    |||||||| ||||| ||||| ||||| |||||||| ||| | ||||||||||| ||||||||||| ||||||   ||||| ||||||||||| |||||||    
T  44150930 catggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctcaccagaaaacttgtggtactagggaataca 44150831  T
Q  173 aatgtgactgtggaactatcttttcaaggta 203  Q
    ||||||| |||||||| || ||||| |||||    
T  44150830 aatgtgattgtggaaccatattttctaggta 44150800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 40749378 - 40749517
Alignment:
Q  65 gtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactag 164  Q
    ||||||| ||||| || ||||| ||||||||||| ||||| || ||    ||||| || || || ||||||||||||||| | ||||| |||||||||||    
T  40749378 gtagaaaacatggcgagaagaaatggaagtgtgataagtgttccaagaaatatgcagtccaatctgattggaaagctcacactaaaacttgtggtactag 40749477  T
Q  165 agaatacaaatgtgactgtggaactatcttttcaaggtaa 204  Q
    |||||| || ||||| ||||| ||  |||| |||||||||    
T  40749478 agaatataagtgtgattgtggtacactcttctcaaggtaa 40749517  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 1983162 - 1983246
Alignment:
Q  63 ttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactca 147  Q
    |||||| |||||  |||| ||||||||||||||||||||||||||||||  ||||| |||||| || ||||||||||| ||||||    
T  1983162 ttgtaggaagcacagtgagaagaagtggaagtgtgagaagtgctcaaaattttatgttgttcaatcggattggaaagcacactca 1983246  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 52248551 - 52248460
Alignment:
Q  7 gtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtga 98  Q
    ||||||||  |||||||||| ||||| |||||| | || ||  | ||||||||||||||||||||||||||||| ||||| ||||| |||||    
T  52248551 gtccaccacaatccttcaagagcactcggtgacctcacaggagtgaaaaagcacttttgtagaaagcatggtgagaagaaatggaaatgtga 52248460  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 46987896 - 46987818
Alignment:
Q  17 atccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtg 95  Q
    ||||||||||||| || || || ||||| |||||||| |||||||||||||| || ||  |||| || |||||||||||    
T  46987896 atccttcaagggctctgggagatttaacagggataaagaagcacttttgtaggaaccacagtgagaataagtggaagtg 46987818  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 12106124 - 12106172
Alignment:
Q  99 gaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactca 147  Q
    |||||||||||||  |||||||||||| || ||||||||||| ||||||    
T  12106124 gaagtgctcaaaattttatgctgttcaatcggattggaaagcacactca 12106172  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 46987823 - 46987775
Alignment:
Q  99 gaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactca 147  Q
    |||||||||||||  |||||||||||| || ||||||||||| ||||||    
T  46987823 gaagtgctcaaaattttatgctgttcaatcggattggaaagcacactca 46987775  T

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