View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18948_low_29 (Length: 239)
Name: NF18948_low_29
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18948_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 55162969 - 55163187
Alignment:
| Q |
1 |
ttactgagattgatataagcaacacacttgatcatgatactcaggtgaggtagctagctagctagaggaattcaagttctacaaaaatgaataaataaat |
100 |
Q |
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| T |
55162969 |
ttactgagattgatataagcaacacacttgatcatgatactcaggtgaggtagctagctag----aggaattcaagttctacaaaaatgaataaataaat |
55163064 |
T |
|
| Q |
101 |
gtttcaatatgnnnnnnn-accacaattatatatttgtttttaagccttgcagctatacatatttcttgtaatgtttgtagtattcatttttcgttttta |
199 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55163065 |
gttttaatatgttttttttaccacaattatatatttgtttttaagccttccagctatacatatttcttgtaatgtttgtagtattcatttttcgttttta |
55163164 |
T |
|
| Q |
200 |
tataatcaatactagaggactaa |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
55163165 |
tataatcaatactagaggactaa |
55163187 |
T |
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