View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18948_low_3 (Length: 681)
Name: NF18948_low_3
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18948_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 53 - 375
Target Start/End: Complemental strand, 30968260 - 30967957
Alignment:
| Q |
53 |
cagttttcagactctggctttttcagtaatagagaagatcctgctacttatgaggaagctgcaaagttcaattgttggaaagaggctatggatcaggaaa |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30968260 |
cagttttcagactctggctttttcagtaatagagaagatcctgctacttatgaggaagctgcaaagttcaattgttggaaagaggctatggatcaggaaa |
30968161 |
T |
|
| Q |
153 |
ttgaagccatagaaagaaatgatacatgggaactaactgatttaccaactggaagcaggaagattagtgtaaaatggatttataagacaa--tacaatga |
250 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30968160 |
ttgaagccatagaaagaaatgatac--------------------caactggaagcaggaagattagtgtaaaatggatttataagacaaaatacaatga |
30968081 |
T |
|
| Q |
251 |
aaatggtaaagttgaaaaacacaaagccagattagtagcaaaggggtactctcaaaagtatggagttgattacaatgaagttttttgctcctgtagccag |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
30968080 |
aaatggtaaagttgaaaaacacaaagccagattagtagcaaaggggtactctcaaaagtatggagttgattacaatgaagt-ttttgctcctgtaaccag |
30967982 |
T |
|
| Q |
351 |
atgggacactattagaactatactt |
375 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
30967981 |
atgggacactaatagaactatactt |
30967957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 623 - 660
Target Start/End: Complemental strand, 30967962 - 30967925
Alignment:
| Q |
623 |
atactttgtttgttaggcaagaaactggaggaaaaata |
660 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30967962 |
atactttgtttgttaggcaagaaactggaggaaaaata |
30967925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 518 - 564
Target Start/End: Complemental strand, 24653908 - 24653862
Alignment:
| Q |
518 |
aaagaaagctttgtatggcctcaaacaagctccaagagcatggtaca |
564 |
Q |
| |
|
|||||||||| | ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
24653908 |
aaagaaagctctatatggtctcaagcaagctccaagagcatggtaca |
24653862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 271 - 371
Target Start/End: Original strand, 608466 - 608565
Alignment:
| Q |
271 |
acaaagccagattagtagcaaaggggtactctcaaaagtatggagttgattacaatgaagttttttgctcctgtagccagatgggacactattagaacta |
370 |
Q |
| |
|
||||||||||| ||||||| || || |||||||| ||||||| || | || |||||||| ||| ||||| || || |||||||||||||| ||||||| |
|
|
| T |
608466 |
acaaagccagactagtagctaaaggctactctcagcagtatggtattaactataatgaagtgttt-gctccagttgcaagatgggacactataagaacta |
608564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 525 - 565
Target Start/End: Complemental strand, 1752663 - 1752623
Alignment:
| Q |
525 |
gctttgtatggcctcaaacaagctccaagagcatggtacag |
565 |
Q |
| |
|
|||||||||||||| |||||||| ||| ||||||||||||| |
|
|
| T |
1752663 |
gctttgtatggccttaaacaagcaccacgagcatggtacag |
1752623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 516 - 564
Target Start/End: Original strand, 42303102 - 42303150
Alignment:
| Q |
516 |
ttaaagaaagctttgtatggcctcaaacaagctccaagagcatggtaca |
564 |
Q |
| |
|
||||||||||| ||||||||| | || ||||| |||||||||||||||| |
|
|
| T |
42303102 |
ttaaagaaagcattgtatggcttgaagcaagcgccaagagcatggtaca |
42303150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 516 - 556
Target Start/End: Complemental strand, 15527932 - 15527892
Alignment:
| Q |
516 |
ttaaagaaagctttgtatggcctcaaacaagctccaagagc |
556 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||| |||| |
|
|
| T |
15527932 |
ttaaagaaagctttttatggtctcaaacaagctccaggagc |
15527892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University