View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18948_low_30 (Length: 234)

Name: NF18948_low_30
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18948_low_30
NF18948_low_30
[»] chr1 (7 HSPs)
chr1 (2-215)||(4160377-4160590)
chr1 (2-128)||(28496106-28496232)
chr1 (13-129)||(12774948-12775064)
chr1 (10-128)||(12804511-12804629)
chr1 (10-128)||(36989348-36989466)
chr1 (2-129)||(42287117-42287244)
chr1 (2-129)||(50788818-50788945)
[»] chr8 (2 HSPs)
chr8 (2-129)||(5788722-5788849)
chr8 (10-114)||(33186743-33186847)
[»] chr4 (2 HSPs)
chr4 (2-129)||(30518147-30518274)
chr4 (2-110)||(22085524-22085632)
[»] chr7 (1 HSPs)
chr7 (7-129)||(40749395-40749517)
[»] chr2 (3 HSPs)
chr2 (2-128)||(40040789-40040915)
chr2 (2-128)||(42898298-42898424)
chr2 (2-130)||(38895855-38895983)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 2 - 215
Target Start/End: Original strand, 4160377 - 4160590
Alignment:
Q  2 gtgataagaagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtg 101  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4160377 gtgagaagaagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtg 4160476  T
Q  102 tgactgtggaaccctcttctcaaggtaagaatcttattaatttaaatttggtcattatagatacaaacaaactaaatcatggtacgttcaataataataa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4160477 tgactgtggaaccctcttctcaaggtaagaatcttattaatttaaatttggtcattatagatacaaacaaactaaatcatggtacgttcaataataataa 4160576  T
Q  202 taatgagtcaaaaa 215  Q
    ||||||||||||||    
T  4160577 taatgagtcaaaaa 4160590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 128
Target Start/End: Complemental strand, 28496232 - 28496106
Alignment:
Q  2 gtgataagaagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtg 101  Q
    |||| ||||||||||| ||||| |||||||| |||  ||||||||| || || ||||||||||||||| | ||||  ||||| || | ||| || || ||    
T  28496232 gtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatg 28496133  T
Q  102 tgactgtggaaccctcttctcaaggta 128  Q
    ||||||||| |||||||||||||||||    
T  28496132 tgactgtggcaccctcttctcaaggta 28496106  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 12774948 - 12775064
Alignment:
Q  13 tggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtgtgactgtggaa 112  Q
    ||||||||||| || ||||||||    ||||| ||||| || ||||||||||||||||| |||| |||||| ||||| |||||||  ||||||||||| |    
T  12774948 tggaagtgtgaaaagtgttctaagaagtatgctgttcaatctgattggaaagctcattctaaaacttgtggtactaaggagtatagatgtgactgtggca 12775047  T
Q  113 ccctcttctcaaggtaa 129  Q
    | |||||||| ||||||    
T  12775048 ctctcttctccaggtaa 12775064  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 12804629 - 12804511
Alignment:
Q  10 aagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtgtgactgtg 109  Q
    |||||||| ||||| || ||||||||   |||||| ||||| || ||||||||||||||||| || | |||||| ||||  |||||||  ||||||||||    
T  12804629 aagtggaaatgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactagggagtatagatgtgactgtg 12804530  T
Q  110 gaaccctcttctcaaggta 128  Q
    | || ||||||||||||||    
T  12804529 gcactctcttctcaaggta 12804511  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 36989348 - 36989466
Alignment:
Q  10 aagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtgtgactgtg 109  Q
    |||||||| ||||| || ||||||||   |||||| ||||| || ||||||||||||||||||||||| ||||| || |  || || || ||||||||||    
T  36989348 aagtggaaatgtgataagtgttctaagaaatatgctgttcaatctgattggaaagctcattccaaaatatgtggtacaagggaatacaaatgtgactgtg 36989447  T
Q  110 gaaccctcttctcaaggta 128  Q
    ||||| |||| || |||||    
T  36989448 gaaccatcttttccaggta 36989466  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 42287117 - 42287244
Alignment:
Q  2 gtgataagaagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtg 101  Q
    |||| ||||||||||| ||||| ||||| || ||   |||||| ||||| || || |||||||| ||||| || | |||||| |||| ||| ||||  ||    
T  42287117 gtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgactggaaagcacattctaagacttgtggtactagagaatatagatg 42287216  T
Q  102 tgactgtggaaccctcttctcaaggtaa 129  Q
    ||| ||||| ||||||||||| ||||||    
T  42287217 tgattgtggcaccctcttctctaggtaa 42287244  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 50788945 - 50788818
Alignment:
Q  2 gtgataagaagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtg 101  Q
    |||| ||||| ||||||||||| || || |||||    ||||| ||||| || |||||||| || ||||| || | ||||||||| | ||| |||| |||    
T  50788945 gtgagaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatataggtg 50788846  T
Q  102 tgactgtggaaccctcttctcaaggtaa 129  Q
    ||||||||| || |||||||| ||||||    
T  50788845 tgactgtggcactctcttctccaggtaa 50788818  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 5788849 - 5788722
Alignment:
Q  2 gtgataagaagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtg 101  Q
    |||| ||||||||||| ||||| || ||||| ||   |||||| ||||| || |||||||||||||||||||||| ||||||||||| ||| ||||  ||    
T  5788849 gtgagaagaagtggaaatgtgaaaagtgttcaaagaaatatgctgttcaatctgattggaaagctcattccaaaacttgtggcactagagaatatagatg 5788750  T
Q  102 tgactgtggaaccctcttctcaaggtaa 129  Q
    ||||||||||||||||||||||||||||    
T  5788749 tgactgtggaaccctcttctcaaggtaa 5788722  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 33186743 - 33186847
Alignment:
Q  10 aagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtgtgactgtg 109  Q
    |||||||| |||||||||||||||||   |||||| ||||| || |||||||||||||| || ||| |||||||  ||| ||||||||| ||||| ||||    
T  33186743 aagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcactctaaagtttgtggttctagagagtataaatgtgattgtg 33186842  T
Q  110 gaacc 114  Q
    |||||    
T  33186843 gaacc 33186847  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 30518274 - 30518147
Alignment:
Q  2 gtgataagaagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtg 101  Q
    |||| |||||||||||||||||||| || || ||||| ||||| |||||||| |||||||||||||| || ||||  ||||| |||| ||| || || ||    
T  30518274 gtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatg 30518175  T
Q  102 tgactgtggaaccctcttctcaaggtaa 129  Q
    ||||||||||||  |||| |||||||||    
T  30518174 tgactgtggaactatcttttcaaggtaa 30518147  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 22085632 - 22085524
Alignment:
Q  2 gtgataagaagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtg 101  Q
    |||| ||||||||||||||||| || ||||| ||   |||||||||||| || |||||||||||||||  ||| |||||||| |||| |||||| || ||    
T  22085632 gtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatg 22085533  T
Q  102 tgactgtgg 110  Q
    ||| |||||    
T  22085532 tgattgtgg 22085524  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 40749395 - 40749517
Alignment:
Q  7 aagaagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtgtgact 106  Q
    ||||| ||||||||||| || ||||| ||   ||||||||| || || ||||||||||||||  | |||| |||||| |||| ||| ||||||||||| |    
T  40749395 aagaaatggaagtgtgataagtgttccaagaaatatgcagtccaatctgattggaaagctcacactaaaacttgtggtactagagaatataagtgtgatt 40749494  T
Q  107 gtggaaccctcttctcaaggtaa 129  Q
    |||| || |||||||||||||||    
T  40749495 gtggtacactcttctcaaggtaa 40749517  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 128
Target Start/End: Original strand, 40040789 - 40040915
Alignment:
Q  2 gtgataagaagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtg 101  Q
    |||| ||||||||||||||||| || ||||||||   |||||||||||| || |||||||| ||||||   || |||||||||||||||||||| |  ||    
T  40040789 gtgagaagaagtggaagtgtgataagtgttctaagaaatatgcagttcaatctgattggaaggctcatagtaagatttgtggcactaaagagtacagatg 40040888  T
Q  102 tgactgtggaaccctcttctcaaggta 128  Q
    ||| ||||| || || ||||| |||||    
T  40040889 tgattgtggcacactattctccaggta 40040915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 128
Target Start/End: Original strand, 42898298 - 42898424
Alignment:
Q  2 gtgataagaagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtg 101  Q
    |||| ||||||||||| ||||| || || |||||    ||||||||||| || || ||||||||||| |||||||  |||||||| | ||| || |  ||    
T  42898298 gtgagaagaagtggaaatgtgacaagtgctctaagaagtatgcagttcaatcagactggaaagctcactccaaaacctgtggcacaagagaatacagatg 42898397  T
Q  102 tgactgtggaaccctcttctcaaggta 128  Q
    |||||||||||||||||||||||||||    
T  42898398 tgactgtggaaccctcttctcaaggta 42898424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 130
Target Start/End: Complemental strand, 38895983 - 38895855
Alignment:
Q  2 gtgataagaagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtg 101  Q
    |||| |||||||||||||||||||| || || |||   ||||| ||||| |||||||||||||| || || || | |||||| |||| ||| || || ||    
T  38895983 gtgagaagaagtggaagtgtgagaagtgctcaaaattttatgctgttcaatcggattggaaagcacactcaaagacttgtggtactagagaatacaaatg 38895884  T
Q  102 tgactgtggaaccctcttctcaaggtaag 130  Q
    ||| ||||| ||  |||| ||||||||||    
T  38895883 tgattgtggcactatcttttcaaggtaag 38895855  T

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