View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18948_low_34 (Length: 218)

Name: NF18948_low_34
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18948_low_34
NF18948_low_34
[»] chr3 (12 HSPs)
chr3 (4-203)||(22367193-22367392)
chr3 (1-206)||(22435897-22436102)
chr3 (1-197)||(22357268-22357464)
chr3 (1-206)||(22467217-22467422)
chr3 (50-197)||(22442054-22442204)
chr3 (1-206)||(22629712-22629914)
chr3 (1-206)||(22353081-22353283)
chr3 (5-135)||(37930132-37930262)
chr3 (1-154)||(22430436-22430589)
chr3 (52-148)||(22634826-22634922)
chr3 (65-155)||(22457819-22457909)
chr3 (65-155)||(22480800-22480890)
[»] chr4 (1 HSPs)
chr4 (24-104)||(29604723-29604803)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 22367193 - 22367392
Alignment:
Q  4 cctatattttgcagggatcgtccttacaaaggatttaggtaatgtattaggttcgagaactagcagtgatcgaacatgtgagctttcaataccttccatt 103  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22367193 cctatattttgtagggatcgtccttacaaaggatttaagtaatgttttaggttcgagaactagcagcgatcgaacatgtgagctttcaataccttccatt 22367292  T
Q  104 agattatcagaattgggtgctattgataggcgccgaatcattccacttaaaggcaattgtcttgcttcaataatattctggcaaaagcttaaatcctcat 203  Q
    |||||||||||| | | ||||||||||||||| |||||||||||| || |||||||||||||  | ||  ||||| ||| ||||||||||||||||||||    
T  22367293 agattatcagaacttgatgctattgataggcgtcgaatcattccagttgaaggcaattgtctgtcctcggtaatactcttgcaaaagcttaaatcctcat 22367392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 22435897 - 22436102
Alignment:
Q  1 ccgcctatattttgcagggatcgtccttacaaaggatttaggtaatgtattaggttcgagaactagcagtgatcgaacatgtgagctttcaataccttcc 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22435897 ccgcctatattttgcagggatcgcccttacaaaggatttaggtaatgtattaggttcgagaactagcagtgatcgaacatgtgagctttcaataccttcc 22435996  T
Q  101 attagattatcagaattgggtgctattgataggcgccgaatcattccacttaaaggcaattgtcttgcttcaataatattctggcaaaagcttaaatcct 200  Q
    |||||||||| |||| ||| ||| ||||||||||| ||| ||| || | ||||||  |||||  |  | ||| ||||||||| |||||| ||||||||||    
T  22435997 attagattataagaactggttgccattgataggcgtcgagtcactctagttaaagaaaattgattgtcctcagtaatattcttgcaaaaacttaaatcct 22436096  T
Q  201 catatt 206  Q
    ||||||    
T  22436097 catatt 22436102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 22357268 - 22357464
Alignment:
Q  1 ccgcctatattttgcagggatcgtccttacaaaggatttaggtaatgtattaggttcgagaactagcagtgatcgaacatgtgagctttcaataccttcc 100  Q
    |||||||||||||| |||||||||| |||||||||||| | || || | | |||||||| ||| |||| |||||||||||||||||||||||||||||||    
T  22357268 ccgcctatattttgtagggatcgtctttacaaaggattcaagtgatctttgaggttcgaaaacaagcaatgatcgaacatgtgagctttcaataccttcc 22357367  T
Q  101 attagattatcagaattgggtgctattgataggcgccgaatcattccacttaaaggcaattgtcttgcttcaataatattctggcaaaagcttaaat 197  Q
    ||| |||||||| |||||||||||||||||||||| |||||||||||| |||||| ||||||| |  | ||| ||||||||| ||||||||||||||    
T  22357368 attcgattatcataattgggtgctattgataggcgtcgaatcattccagttaaagacaattgtttgccctcagtaatattctcgcaaaagcttaaat 22357464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 22467217 - 22467422
Alignment:
Q  1 ccgcctatattttgcagggatcgtccttacaaaggatttaggtaatgtattaggttcgagaactagcagtgatcgaacatgtgagctttcaataccttcc 100  Q
    |||||||||||||| ||||||||||||||||||||||||| || |||| || |||  || ||  ||||||||||||||||||||| |||||||| ||| |    
T  22467217 ccgcctatattttgtagggatcgtccttacaaaggatttaagtgatgtctttggtgtgaaaataagcagtgatcgaacatgtgagttttcaataactttc 22467316  T
Q  101 attagattatcagaattgggtgctattgataggcgccgaatcattccacttaaaggcaattgtcttgcttcaataatattctggcaaaagcttaaatcct 200  Q
    |||| |||||||||  | | | ||||||||||||| |||||||||||| |||||| ||||||| |  | ||| ||||||||| |||||| ||||||||||    
T  22467317 attaaattatcagaggtagtttctattgataggcgtcgaatcattccagttaaagacaattgtttgtcctcagtaatattcttgcaaaaacttaaatcct 22467416  T
Q  201 catatt 206  Q
    ||||||    
T  22467417 catatt 22467422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 50 - 197
Target Start/End: Original strand, 22442054 - 22442204
Alignment:
Q  50 ttaggttcgagaactagcagtgatcgaacatgtgagctttcaataccttccatta---gattatcagaattgggtgctattgataggcgccgaatcattc 146  Q
    |||||||||||||| ||||||||||||||||||||||| || || ||||||||||   ||||||||||||||||||||||||||||||| ||||||||||    
T  22442054 ttaggttcgagaacaagcagtgatcgaacatgtgagctatctattccttccattattagattatcagaattgggtgctattgataggcgtcgaatcattc 22442153  T
Q  147 cacttaaaggcaattgtcttgcttcaataatattctggcaaaagcttaaat 197  Q
    || |||||| ||||||| || | ||| ||||||||| ||||||||||||||    
T  22442154 cagttaaagacaattgttttccctcagtaatattctcgcaaaagcttaaat 22442204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 22629712 - 22629914
Alignment:
Q  1 ccgcctatattttgcagggatcgtccttacaaaggatttaggtaatgtattaggttcgagaactagcagtgatcgaacatgtgagctttcaataccttcc 100  Q
    |||||||||||||| |||||| ||| |||||||||||||| || ||||||| |||  || ||| ||||||||||||||||||||| ||||||||| || |    
T  22629712 ccgcctatattttgtagggattgtctttacaaaggatttaagtgatgtatttggtgtgaaaacaagcagtgatcgaacatgtgagttttcaatacttttc 22629811  T
Q  101 attagattatcagaattgggtgctattgataggcgccgaatcattccacttaaaggcaattgtcttg-cttcaataatattctggcaaaagcttaaatcc 199  Q
    |||| ||||||||   | | ||||||||||||||| | |||||||||| |||||| |||||| |||| | ||||||||||||| |||||| |||||||||    
T  22629812 attaaattatcag---tagttgctattgataggcgtcaaatcattccagttaaagacaattg-cttgtcctcaataatattcttgcaaaaacttaaatcc 22629907  T
Q  200 tcatatt 206  Q
    |||||||    
T  22629908 tcatatt 22629914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 22353081 - 22353283
Alignment:
Q  1 ccgcctatattttgcagggatcgtccttacaaaggatttaggtaatgtattaggttcgagaactagcagtgatcgaacatgtgagctttcaataccttcc 100  Q
    |||||||||||||| ||||||||||||||||||||||||  || |||| ||| ||   ||||| ||||||||||||||||||||| ||||||||| || |    
T  22353081 ccgcctatattttgtagggatcgtccttacaaaggattttagtgatgttttatgtctcagaacaagcagtgatcgaacatgtgagttttcaatacttttc 22353180  T
Q  101 attagattatcagaattgggtgctattgataggcgccgaatcattccacttaaaggcaattgtcttgcttcaataatattctggcaaaagcttaaatcct 200  Q
    ||||  ||||||||| | | ||||||||||||||| | |||||||||| |||| | || |||| |||||    ||||||||| |||||| ||||||||||    
T  22353181 attaacttatcagaactagttgctattgataggcgtcaaatcattccagttaatgacagttgt-ttgct--cgtaatattcttgcaaaaacttaaatcct 22353277  T
Q  201 catatt 206  Q
    ||||||    
T  22353278 catatt 22353283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 5 - 135
Target Start/End: Original strand, 37930132 - 37930262
Alignment:
Q  5 ctatattttgcagggatcgtccttacaaaggatttaggtaatgtattaggttcgagaactagcagtgatcgaacatgtgagctttcaataccttccatta 104  Q
    |||||| ||| ||||||  |||| |||||||||||  || |||| | |||||| ||||  ||||||||||||||| |||| |||||||||||||||||||    
T  37930132 ctatatgttgtagggattctcctaacaaaggatttgagtgatgtttgaggttctagaataagcagtgatcgaacacgtgaactttcaataccttccatta 37930231  T
Q  105 gattatcagaattgggtgctattgataggcg 135  Q
    |||||| ||||||||||||||||||||||||    
T  37930232 gattattagaattgggtgctattgataggcg 37930262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 22430436 - 22430589
Alignment:
Q  1 ccgcctatattttgcagggatcgtccttacaaaggatttaggtaatgtattaggttcgagaactagcagtgatcgaacatgtgagctttcaataccttcc 100  Q
    |||||||||| |||  |||||  |||| |||||||||| | || |||| |||  |  |||||| |||| |||||||||||||| | ||||||||||||||    
T  22430436 ccgcctatatgttgttgggattctcctcacaaaggattcaagtgatgttttatttgtgagaacaagcactgatcgaacatgtgggttttcaataccttcc 22430535  T
Q  101 attagattatcagaattgggtgctattgataggcgccgaatcattccacttaaa 154  Q
    |||||| || | |||||||||||||||||||||||  ||||||||||| |||||    
T  22430536 attagaatacctgaattgggtgctattgataggcgttgaatcattccagttaaa 22430589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 52 - 148
Target Start/End: Original strand, 22634826 - 22634922
Alignment:
Q  52 aggttcgagaactagcagtgatcgaacatgtgagctttcaataccttccattagattatcagaattgggtgctattgataggcgccgaatcattcca 148  Q
    |||||||||||  |||| |||||||| |  ||||||||||||| ||||| |||||||||||||||||| |||||||||||| || ||||||||||||    
T  22634826 aggttcgagaataagcaatgatcgaatacttgagctttcaatatcttcccttagattatcagaattggatgctattgatagacgtcgaatcattcca 22634922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 22457819 - 22457909
Alignment:
Q  65 agcagtgatcgaacatgtgagctttcaataccttccattagattatcagaattgggtgctattgataggcgccgaatcattccacttaaag 155  Q
    |||||||||||||| |||||| ||||||||  |||||| | ||| ||| |  ||  ||||||||||||||| |||| ||| ||||||||||    
T  22457819 agcagtgatcgaacctgtgagttttcaatattttccatcaaattgtcaaatctgattgctattgataggcgtcgaaccatcccacttaaag 22457909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 22480800 - 22480890
Alignment:
Q  65 agcagtgatcgaacatgtgagctttcaataccttccattagattatcagaattgggtgctattgataggcgccgaatcattccacttaaag 155  Q
    |||||||||||||| |||||| ||||||||  |||||| | ||| ||| |  ||  ||||||||||||||| |||| ||| ||||||||||    
T  22480800 agcagtgatcgaacctgtgagttttcaatattttccatcaaattgtcaaatctgattgctattgataggcgtcgaaccatcccacttaaag 22480890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 29604723 - 29604803
Alignment:
Q  24 tccttacaaaggatttaggtaatgtattaggttcgagaactagcagtgatcgaacatgtgagctttcaataccttccatta 104  Q
    ||||| ||||||||| | ||||||| ||||||  | |||| |  |||||||||||||||||| ||||||||||||||||||    
T  29604723 tccttgcaaaggattcaagtaatgttttaggtgggtgaacaaaaagtgatcgaacatgtgagttttcaataccttccatta 29604803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University