View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18948_low_4 (Length: 513)
Name: NF18948_low_4
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18948_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 32377241 - 32377479
Alignment:
| Q |
7 |
acatcatcactttgaatgacatcaaggaaaggagtaaggtaaatggaaggatcgatagtgcgccattcttgttgaggattgaatatgagagaacggagag |
106 |
Q |
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| T |
32377241 |
acatcatcgctttgaatgacatcaaggaaaggagtaaggtaaatggaaggatcgatagtgcgccattcttgttgaggattgaatatgagagaacggagag |
32377340 |
T |
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| Q |
107 |
accttaaagaattaataatggaagaatcgtaggattcttcaggagaagatatgttgtagacaggagtaaattcgggataacgtcgtatcactgctagaac |
206 |
Q |
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| T |
32377341 |
accttaaagaattaataatggaagaatcgtaggattcttcaggagaagatatgttgtagacaggagtaaattcgggataacgtcgtatcactgctagaac |
32377440 |
T |
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| Q |
207 |
tgcaccaacttcagtgcttaacatgcatgagagtcctag |
245 |
Q |
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| T |
32377441 |
tgcaccaacttcagtgcttaacatgcatgagagtcctag |
32377479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 285 - 471
Target Start/End: Original strand, 32377519 - 32377705
Alignment:
| Q |
285 |
attacgatcatcttctagttcttcgtgtgtgaaatcttctatgctatccattgcatgcatgaagatgtaaaattaatattcctaggaaaaatatggttac |
384 |
Q |
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| T |
32377519 |
attacgatcatcttctagttcttcgtgtgtgaaatcttctatgctatccattgcatgcatgaagatgtaaaattaatattcctaggaaaaatatggttac |
32377618 |
T |
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| Q |
385 |
gtagttaattaaccatgtgcgtgtctgatggttttaaattgcagttgcagttactactatcgttatctcttactttgtgtagaattg |
471 |
Q |
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| T |
32377619 |
gtagttaattaaccatgtgcgtgtctgatggttttaaattgcagttgcagttactactatcgtgatctcttactttgtgtagaattg |
32377705 |
T |
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