View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18948_low_6 (Length: 469)
Name: NF18948_low_6
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18948_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 10 - 450
Target Start/End: Complemental strand, 30425528 - 30425088
Alignment:
| Q |
10 |
attattctacaaggaacggatgtcatttacttgtattttccacgttagttattttaaacagaaagttgacactacggacaaaaaacaaatacatgatttt |
109 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30425528 |
attattctacatggaacggatgtcatttacttgtattttccacgttagttattttaaacagaaagttgacactacggacaaaaaacaaatacatgatttt |
30425429 |
T |
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| Q |
110 |
gtaaggatgaaaagaaaacaataaggtatttatagggactaaaaccgaaattcgctctatttacagggacaaaacacatatttaaacaattctgtttttt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30425428 |
gtaaggatgaaaagaaaacaataaggtatttatagggactaaaaccgaaattcgctctatttacagggacaaaacacatatttaaacaattctgtttttt |
30425329 |
T |
|
| Q |
210 |
ataagaccaaactcctgttaacttgttcaacaagtaacctggaactgattttaaggtcatagcgtacaggaagtatcaagtaaacataataatagaagct |
309 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30425328 |
ataagaccaaactcctgtatacttgttcaacaagtaatctggaactgatattaaggtcaaagcgtacaggaagtatcaagtaaacataataatagaagct |
30425229 |
T |
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| Q |
310 |
gagaggggatgctcccgatcaaactaccagatattgcaggagtaatcacaccgtcaccaatcgtcatgcaagttcccaacagaacaaatattaacagtcc |
409 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30425228 |
gagaggggctgctcccgatcaaactacctgatattgcaggagtaatcacaccatcaccaatcgtcatgcaagttcccaacagaacaaatattaacagtcc |
30425129 |
T |
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| Q |
410 |
tttctggaatctaggatgcttttcaaagaacagtttcaaaa |
450 |
Q |
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| T |
30425128 |
tttctggaatctaggatgcttttcaaagaacagcttcaaaa |
30425088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 27 - 248
Target Start/End: Original strand, 30527261 - 30527492
Alignment:
| Q |
27 |
ggatgtcatttacttgtattttccacgttagttattttaaacagaaagttgacactacggacaaaaaacaaatacatgattttgtaaggatgaaaagaaa |
126 |
Q |
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|||||||||||| | |||||| |||| | || ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30527261 |
ggatgtcatttagtcgtatttgccacatcagatattttaaatagaaagttgacactacggacaaaaaacaaatacatgattctgtaaggatgaaaagaaa |
30527360 |
T |
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| Q |
127 |
----------acaataaggtatttatagggactaaaaccgaaattcgctctatttacagggacaaaacacatatttaaacaattctgttttttataagac |
216 |
Q |
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| || |||||||||||||||||||||||| ||||| |||||||||| |||||| |||||||||| |||| ||||||||||||||||||| |
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| T |
30527361 |
gagaaagaaaaaaaaaaggtatttatagggactaaaaccaaaatttgctctatttatggggacagaacacatattcaaaccattctgttttttataagac |
30527460 |
T |
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| Q |
217 |
caaactcctgttaacttgttcaacaagtaacc |
248 |
Q |
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|||||||| || |||||| |||||||||||| |
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| T |
30527461 |
caaactcccttttacttgtacaacaagtaacc |
30527492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 27 - 248
Target Start/End: Original strand, 30567601 - 30567832
Alignment:
| Q |
27 |
ggatgtcatttacttgtattttccacgttagttattttaaacagaaagttgacactacggacaaaaaacaaatacatgattttgtaaggatgaaaagaaa |
126 |
Q |
| |
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|||||||||||| | |||||| |||| | || ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30567601 |
ggatgtcatttagtcgtatttgccacatcagatattttaaatagaaagttgacactacggacaaaaaacaaatacatgattctgtaaggatgaaaagaaa |
30567700 |
T |
|
| Q |
127 |
----------acaataaggtatttatagggactaaaaccgaaattcgctctatttacagggacaaaacacatatttaaacaattctgttttttataagac |
216 |
Q |
| |
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| || |||||||||||||||||||||||| ||||| |||||||||| |||||| |||||||||| |||| ||||||||||||||||||| |
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| T |
30567701 |
gagaaagaaaaaaaaaaggtatttatagggactaaaaccaaaatttgctctatttatggggacagaacacatattcaaaccattctgttttttataagac |
30567800 |
T |
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| Q |
217 |
caaactcctgttaacttgttcaacaagtaacc |
248 |
Q |
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|||||||| || |||||| |||||||||||| |
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| T |
30567801 |
caaactcccttttacttgtacaacaagtaacc |
30567832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 315 - 450
Target Start/End: Original strand, 30527508 - 30527643
Alignment:
| Q |
315 |
gggatgctcccgatcaaactaccagatattgcaggagtaatcacaccgtcaccaatcgtcatgcaagttcccaacagaacaaatattaacagtcctttct |
414 |
Q |
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|||||||||| ||||||| |||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
30527508 |
gggatgctcctgatcaaagtacctgatattgcaggagtaatcacaccatcaccaattgtcatgcaagttcccaacaaaacaaagattaacagtcctttct |
30527607 |
T |
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| Q |
415 |
ggaatctaggatgcttttcaaagaacagtttcaaaa |
450 |
Q |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
30527608 |
ggaatctaggatgcttttcaaagaacagcttcaaaa |
30527643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 315 - 450
Target Start/End: Original strand, 30567848 - 30567983
Alignment:
| Q |
315 |
gggatgctcccgatcaaactaccagatattgcaggagtaatcacaccgtcaccaatcgtcatgcaagttcccaacagaacaaatattaacagtcctttct |
414 |
Q |
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|||||||||| ||||||| |||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
30567848 |
gggatgctcctgatcaaagtacctgatattgcaggagtaatcacaccatcaccaattgtcatgcaagttcccaacaaaacaaagattaacagtcctttct |
30567947 |
T |
|
| Q |
415 |
ggaatctaggatgcttttcaaagaacagtttcaaaa |
450 |
Q |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
30567948 |
ggaatctaggatgcttttcaaagaacagcttcaaaa |
30567983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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