View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18948_low_8 (Length: 451)

Name: NF18948_low_8
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18948_low_8
NF18948_low_8
[»] chr6 (7 HSPs)
chr6 (264-418)||(175234-175406)
chr6 (1-126)||(22575642-22575767)
chr6 (256-295)||(11323122-11323161)
chr6 (256-294)||(2485668-2485706)
chr6 (256-294)||(14894645-14894683)
chr6 (256-286)||(14910095-14910125)
chr6 (256-294)||(26538165-26538203)
[»] chr5 (6 HSPs)
chr5 (256-295)||(19514316-19514355)
chr5 (256-295)||(24007294-24007333)
chr5 (256-292)||(19514274-19514310)
chr5 (256-294)||(19650498-19650536)
chr5 (256-294)||(21260764-21260802)
chr5 (256-294)||(28766089-28766127)
[»] chr2 (2 HSPs)
chr2 (256-295)||(629401-629440)
chr2 (261-294)||(7061730-7061763)
[»] chr1 (10 HSPs)
chr1 (256-295)||(46022133-46022172)
chr1 (256-295)||(48995724-48995763)
chr1 (256-294)||(8007233-8007271)
chr1 (256-294)||(37706270-37706308)
chr1 (256-292)||(48995682-48995718)
chr1 (256-294)||(28039703-28039741)
chr1 (256-294)||(33193669-33193707)
chr1 (256-294)||(49162480-49162518)
chr1 (256-293)||(50231395-50231432)
chr1 (267-295)||(32306763-32306791)
[»] chr4 (6 HSPs)
chr4 (256-294)||(43317405-43317443)
chr4 (256-294)||(12214808-12214846)
chr4 (256-294)||(27104119-27104157)
chr4 (256-294)||(32547593-32547631)
chr4 (256-294)||(44469176-44469214)
chr4 (256-294)||(46343097-46343135)
[»] chr8 (9 HSPs)
chr8 (256-294)||(11903782-11903820)
chr8 (256-294)||(13468973-13469011)
chr8 (256-294)||(15318264-15318302)
chr8 (256-294)||(15498633-15498671)
chr8 (256-295)||(36343483-36343522)
chr8 (256-294)||(28773434-28773472)
chr8 (256-294)||(32889173-32889211)
chr8 (256-294)||(34179750-34179788)
chr8 (256-288)||(41942724-41942756)
[»] chr7 (5 HSPs)
chr7 (256-295)||(39675498-39675537)
chr7 (256-295)||(44485485-44485524)
chr7 (256-294)||(20045156-20045194)
chr7 (256-294)||(21094254-21094292)
chr7 (256-294)||(27725015-27725053)
[»] chr3 (8 HSPs)
chr3 (256-295)||(2368795-2368834)
chr3 (256-294)||(13875272-13875310)
chr3 (264-294)||(18461560-18461590)
chr3 (256-294)||(22101797-22101835)
chr3 (256-294)||(22176433-22176471)
chr3 (256-294)||(51139768-51139806)
chr3 (256-294)||(51834130-51834168)
chr3 (254-294)||(38176739-38176779)
[»] scaffold0031 (1 HSPs)
scaffold0031 (256-294)||(47447-47485)


Alignment Details
Target: chr6 (Bit Score: 98; Significance: 4e-48; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 264 - 418
Target Start/End: Original strand, 175234 - 175406
Alignment:
Q  264 gtatttttgaaaagaaaaattcaacccaaaaagttttctctataaatagattatttacttagcagttcaatc------------------gtgttatttt 345  Q
    |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||    
T  175234 gtatttttaaaaaggaaaattcagcccaaaaagttttctctataaatagattatttacttagcagttcaatcatgtttttatttagtatcgtgttatttt 175333  T
Q  346 tgacagatattgattcatcagttacttactgcggccacaaacaagcatgtcgacagtagaaccatatagaaat 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  175334 tgacagatattgattcatcagttacttactgcggccacaaacaagcatgtcgacagtagcaccatatagaaat 175406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 22575767 - 22575642
Alignment:
Q  1 acgaaccaattaacaaannnnnnngtcaaatagtccatttacgaaattctcctcttaagttaaataagtgggctcctttattatgcaatgtctcaaccaa 100  Q
    |||||||||||||||||       ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  22575767 acgaaccaattaacaaatttttttgtcaaatagtccatttacgaaattcgcctcttaagttgaataagtgggctcctgtattatgcaatgtctcaaccaa 22575668  T
Q  101 ctaagataaattcaaagggacacgaa 126  Q
    ||||| ||||||||| ||||||||||    
T  22575667 ctaaggtaaattcaaggggacacgaa 22575642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 11323161 - 11323122
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaaa 295  Q
    ||||||||||||||||| |||||||||| |||||||||||    
T  11323161 aattgagggtatttttggaaagaaaaatccaacccaaaaa 11323122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 2485706 - 2485668
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  2485706 aattgagggtatttttgaaaagaaaaatttagcccaaaa 2485668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 14894683 - 14894645
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  14894683 aattaagggtatttttgaaaagaaaaatccaacccaaaa 14894645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 286
Target Start/End: Original strand, 14910095 - 14910125
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattca 286  Q
    |||||||||||||||||||||||||||||||    
T  14910095 aattgagggtatttttgaaaagaaaaattca 14910125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 26538203 - 26538165
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  26538203 aattgagggtatttttgaaaagaaaaatccaacacaaaa 26538165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 19514316 - 19514355
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaaa 295  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19514316 aattgagggtatttttgaaaagaaaaattcaacccaaaaa 19514355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 24007333 - 24007294
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaaa 295  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24007333 aattgagggtatttttgaaaagaaaaattcaacccaaaaa 24007294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 19514274 - 19514310
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaa 292  Q
    |||||| ||||||||||||||||||||||||||||||    
T  19514274 aattgatggtatttttgaaaagaaaaattcaacccaa 19514310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 19650536 - 19650498
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    |||||||||||||||| |||||||||||||| |||||||    
T  19650536 aattgagggtattttttaaaagaaaaattcagcccaaaa 19650498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 21260802 - 21260764
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  21260802 aatttagggtatttttaaaaagaaaaattcaacccaaaa 21260764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 28766127 - 28766089
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  28766127 aattaagggtatttttggaaagaaaaattcaacccaaaa 28766089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 629440 - 629401
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaaa 295  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  629440 aattgagggtatttttgaaaagaaaaattcaacccaaaaa 629401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 7061763 - 7061730
Alignment:
Q  261 agggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    ||||||||||||||||||||| ||||||||||||    
T  7061763 agggtatttttgaaaagaaaagttcaacccaaaa 7061730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 46022172 - 46022133
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaaa 295  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46022172 aattgagggtatttttgaaaagaaaaattcaacccaaaaa 46022133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 48995724 - 48995763
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaaa 295  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48995724 aattgagggtatttttgaaaagaaaaattcaacccaaaaa 48995763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 8007271 - 8007233
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8007271 aattgagggtatttttgaaaagaaaaattcaacccaaaa 8007233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 37706270 - 37706308
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  37706270 aattgagggtatttttgaaaagaaaaattcatcccaaaa 37706308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 48995682 - 48995718
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaa 292  Q
    |||||| ||||||||||||||||||||||||||||||    
T  48995682 aattgatggtatttttgaaaagaaaaattcaacccaa 48995718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 28039741 - 28039703
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  28039741 aattgagggtatgtttgaaaagaaaaagtcaacccaaaa 28039703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 33193707 - 33193669
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  33193707 aattgagggcacttttgaaaagaaaaattcaacccaaaa 33193669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 49162518 - 49162480
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  49162518 aattgagggtattgttggaaagaaaaattcaacccaaaa 49162480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 50231432 - 50231395
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaa 293  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  50231432 aattaagggtatttttgaaaagaaaatttcaacccaaa 50231395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 295
Target Start/End: Complemental strand, 32306791 - 32306763
Alignment:
Q  267 tttttgaaaagaaaaattcaacccaaaaa 295  Q
    |||||||||||||||||||||||||||||    
T  32306791 tttttgaaaagaaaaattcaacccaaaaa 32306763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 43317443 - 43317405
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43317443 aattgagggtatttttgaaaagaaaaattcaacccaaaa 43317405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 12214808 - 12214846
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  12214808 aattgagggtatttttggaaagaaaaattcagcccaaaa 12214846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 27104119 - 27104157
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  27104119 aattgagggtatttttgaaaagaaaaatttagcccaaaa 27104157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 32547593 - 32547631
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  32547593 aattaagggtatttttgaaaagaaaaattcaaccaaaaa 32547631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 44469176 - 44469214
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  44469176 aattgagggtatttttggaaagaaaaattcagcccaaaa 44469214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 46343097 - 46343135
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  46343097 aattgggggtatttttggaaagaaaaattcaacccaaaa 46343135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 11903820 - 11903782
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  11903820 aattgagggtatttctgaaaagaaaaattcaacccaaaa 11903782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 13469011 - 13468973
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  13469011 aattgagggtattcttgaaaagaaaaattcaacccaaaa 13468973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 15318264 - 15318302
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  15318264 aattgagggtatttttgaaaagaaaaattcaaaccaaaa 15318302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 15498633 - 15498671
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  15498633 aattgagggtatttttgaaaagaaaaattcaaaccaaaa 15498671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 36343483 - 36343522
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaaa 295  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  36343483 aattgagggtatttttgaaaagaaaaatccaatccaaaaa 36343522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 28773472 - 28773434
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  28773472 aattgagggtatttttggaaagaaaaattcaactcaaaa 28773434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 32889211 - 32889173
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  32889211 aattaagggtatttttgaaaagaaaagttcaacccaaaa 32889173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 34179788 - 34179750
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  34179788 aattgagggcatttttgaaaagaaaaatccaacccaaaa 34179750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 41942724 - 41942756
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaac 288  Q
    |||||| ||||||||||||||||||||||||||    
T  41942724 aattgatggtatttttgaaaagaaaaattcaac 41942756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 39675537 - 39675498
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaaa 295  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  39675537 aattaagggtatttttgaaaagaaaaattcaacctaaaaa 39675498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 44485524 - 44485485
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaaa 295  Q
    |||| |||||||||||||||||||||||||| ||||||||    
T  44485524 aattaagggtatttttgaaaagaaaaattcagcccaaaaa 44485485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 20045194 - 20045156
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  20045194 aattgagggaatttttggaaagaaaaattcaacccaaaa 20045156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 21094254 - 21094292
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  21094254 aattgagggtatttttggaaagaaaaatccaacccaaaa 21094292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 27725015 - 27725053
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  27725015 aattgagggtatttttggaaagaaaaatccaacccaaaa 27725053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 2368795 - 2368834
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaaa 295  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  2368795 aattgagggtatttttgaaaagaaaaatccaaccaaaaaa 2368834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 13875310 - 13875272
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  13875310 aattgaggatatttttggaaagaaaaattcaacccaaaa 13875272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 294
Target Start/End: Original strand, 18461560 - 18461590
Alignment:
Q  264 gtatttttgaaaagaaaaattcaacccaaaa 294  Q
    |||||||||||||||||||||||||||||||    
T  18461560 gtatttttgaaaagaaaaattcaacccaaaa 18461590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 22101835 - 22101797
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  22101835 aattaagggtatttttgaaaagaaaagttcaacccaaaa 22101797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 22176471 - 22176433
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  22176471 aattaagggtatttttgaaaagaaaagttcaacccaaaa 22176433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 51139768 - 51139806
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  51139768 aattaagggtatttttgaaaagaaaagttcaacccaaaa 51139806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 51834130 - 51834168
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  51834130 aattgagggtatttttggaaagaaaaattcaactcaaaa 51834168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 38176779 - 38176739
Alignment:
Q  254 ataattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  38176779 ataattgagggcatttttggaaagaaaaatccaacccaaaa 38176739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 47447 - 47485
Alignment:
Q  256 aattgagggtatttttgaaaagaaaaattcaacccaaaa 294  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  47447 aattgagggtagttttgagaagaaaaattcaacccaaaa 47485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University