View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18948_low_9 (Length: 443)
Name: NF18948_low_9
Description: NF18948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18948_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 4337980 - 4338411
Alignment:
| Q |
1 |
caaaaaagaatgaagaattattttgtttaacatgcatattttttatcggtgtgccatgatgctcgcatcgagaattgccattctttttctttctaatttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4337980 |
caaaaaagaatgaagaattattttgtttaacatgcatattttttatcggtgtgccatgatgctcgcatcgagaattgccattctttttctttctaatttt |
4338079 |
T |
|
| Q |
101 |
gattggtgaaaattggttccacttgctgacatagagggtttctctttcttgtggtaggttccagaactgtttaagaggagacatgttcccttgatgttga |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4338080 |
gattggtgaaaattggttccgcttgctgacatagagggtttctctttcttgtggtaggttccagaactgtttaagaggagacctgttcccttgatgttga |
4338179 |
T |
|
| Q |
201 |
gggtatgagcatcttgcttgccgcacacattgtttcaccctactgcagctagactggattcatcagtgcctttcttggtaatgcaccattacaatgaatg |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4338180 |
gggtatgagcatctggcttgccgcacacattgtttcaccctactgcagctagactggattcatcagtgcctttcttggtaatgcaccattacaatgaatg |
4338279 |
T |
|
| Q |
301 |
ttttatttaatttcaactttctttttgtgagccagcattttctcagtctttgctcgtgttttctctaaaacttttcttatagttagacaaaatctatcaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4338280 |
ttttatttaatttcaactttctttttgtgagccagcattttctcagtctttgctcgtgttttctctaaaacttttcttatagttagacaaaatctatcaa |
4338379 |
T |
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| Q |
401 |
gatcccaaaagattcttagcatgcacaatatt |
432 |
Q |
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| T |
4338380 |
gatcccaaaagattcttagcatgcacaatatt |
4338411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 4347088 - 4347310
Alignment:
| Q |
13 |
aagaattattttgtttaacatgcatattttttatcggtgtgccatgatgctcgcatcgagaattgccattctttttctttctaattttgattggtgaaaa |
112 |
Q |
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||||| ||||||||||| ||||||| |||||||| | |||| || ||||||||||| |||||||| ||||||||| ||||||| |||||||| ||| || |
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| T |
4347088 |
aagaactattttgtttagcatgcatcttttttattgttgtgtcaggatgctcgcattgagaattgtcattcttttcctttctatttttgatttgtggaat |
4347187 |
T |
|
| Q |
113 |
ttggttccacttgctgacatagagggtttctctttcttgtggtaggttccagaactgtttaagaggagacatgttcccttgatgttgagggtatgagcat |
212 |
Q |
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|||||| || ||| ||| | |||||||||||||| || |||||||||||||||||||| |||| ||||||||||||||||||| ||| || | |
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| T |
4347188 |
ttggttttgctggctagtgtaggagatttctctttcttgtagtttgttccagaactgtttaagag-agacctgttcccttgatgttgaggatattggctt |
4347286 |
T |
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| Q |
213 |
cttgcttgccgcacacattgtttc |
236 |
Q |
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||||||||||||| |||||||||| |
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| T |
4347287 |
cttgcttgccgcatacattgtttc |
4347310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 4363514 - 4363737
Alignment:
| Q |
13 |
aagaattattttgtttaacatgcatattttttatcggtgtgccatgatgctcgcatcgagaattgccattctttttctttctaattttgattggtgaaaa |
112 |
Q |
| |
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||||| ||||||||||| ||||||| ||||| || |||||| || |||||| |||| |||||||| ||||||||| ||||||| || ||||||||| | |
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| T |
4363514 |
aagaactattttgtttagcatgcatctttttcattggtgtggcaggatgcttgcattgagaattgtcattcttttcctttctatttatgattggtgtgat |
4363613 |
T |
|
| Q |
113 |
ttggttccacttgctgacatagagggtttctctttcttgtggtaggttccagaactgtttaagaggagaca-tgttcccttgatgttgagggtatgagca |
211 |
Q |
| |
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|||||| || |||| ||| | |||| ||||||||| || |||||||||||| |||||||| |||| ||||||||||||||||||| ||||||| |
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| T |
4363614 |
ttggttttgctggctggtgtaggagatttccctttcttgttgttggttccagaactttttaagag-agaccctgttcccttgatgttgaggatatgagct |
4363712 |
T |
|
| Q |
212 |
tcttgcttgccgcacacattgtttc |
236 |
Q |
| |
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|||||||||| ||||| |||||||| |
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| T |
4363713 |
tcttgcttgctgcacatattgtttc |
4363737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 4118814 - 4118720
Alignment:
| Q |
6 |
aagaatgaagaattattttgtttaacatgcatattttttatcggtgtgccatgatgctcgcatcgagaattgccattctttttctttctaatttt |
100 |
Q |
| |
|
||||||||| | ||||||| |||| |||||||||||||||| | ||||||| |||||| |||| ||| ||| || |||||| ||||||| |||| |
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| T |
4118814 |
aagaatgaaaagttattttatttagcatgcatattttttattgatgtgccaagatgcttgcattaagatttgtcactcttttcctttctattttt |
4118720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 4121882 - 4121832
Alignment:
| Q |
6 |
aagaatgaagaattattttgtttaacatgcatattttttatcggtgtgcca |
56 |
Q |
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|||||||||||||||||||||||| ||||||||||||| || ||| ||||| |
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| T |
4121882 |
aagaatgaagaattattttgtttagcatgcatatttttcattggtatgcca |
4121832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 4131607 - 4131537
Alignment:
| Q |
48 |
ggtgtgccatgatgctcgcatcgagaattgccattctttttctttctaattttgattggtgaaaattggtt |
118 |
Q |
| |
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||||||||| ||| || ||| |||||||| ||||||||| ||||||| |||||||||||| || |||||| |
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| T |
4131607 |
ggtgtgccaagattctttcattgagaattgtcattcttttcctttctatttttgattggtggaatttggtt |
4131537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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