View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18949_high_12 (Length: 262)
Name: NF18949_high_12
Description: NF18949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18949_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 23517049 - 23517270
Alignment:
| Q |
1 |
tgagagagaagtataagagacaaaagaaagcaatttctgatatctagcagcactattcatgaaatcaattttaaagaaatcaattttgtttctagatcta |
100 |
Q |
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| T |
23517049 |
tgagagagaagtataagagacaaaagaaagcaatttctgatatctagcagcaccattcatgaaatcaattttaaagaaattaattttgtttctagatcta |
23517148 |
T |
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| Q |
101 |
atgtgagaggaaagaagattcaatcaataatgaacattggaaaatgttatcttggagccgaaactttattgagaacagaaattcacaagaaacac--aat |
198 |
Q |
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| T |
23517149 |
atgtgagaggaaagaagattcaatcaataatgaacattggaaaatgttatcttggagcctaaactttattgagaacagaaattcacaagaaacacaaaat |
23517248 |
T |
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| Q |
199 |
atttaaacattaaaatttagta |
220 |
Q |
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| T |
23517249 |
atttaaacattaaaatttagta |
23517270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 43598980 - 43598912
Alignment:
| Q |
55 |
attcatgaaatcaattttaaagaaatcaattttgtttctagatctaatgtgagaggaaagaagattcaa |
123 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| ||||| |
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| T |
43598980 |
attcatgaaatcaattttaaagaaatcaaatttgtttctagatctattgtgagagaaaagaaggttcaa |
43598912 |
T |
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