View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18949_high_7 (Length: 365)
Name: NF18949_high_7
Description: NF18949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18949_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 46 - 280
Target Start/End: Complemental strand, 34036973 - 34036740
Alignment:
| Q |
46 |
aaaaataaaggtagaaaggaaatctatcttattcgaaaaatttgttcaatgtatgagtgtgagcagaactggcctggatatgtaacaaaatttgaaccta |
145 |
Q |
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| T |
34036973 |
aaaaataaaggtaaaaaggaaatctatcttatttaaaaaatttgttcaatgtatgagtgtgagtagaactgacctggatatgtaacaaaatttgaaccta |
34036874 |
T |
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| Q |
146 |
cnnnnnnnattccttgaagcttcaaattcaaattataccaattaatagaactgaatcatgttctgtggaagcaaaatttgacaaataaaataagctcttg |
245 |
Q |
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| T |
34036873 |
c-tttttgattccttgcagtttcaaattcaaattatatcaattgaaagaactgaatcatgtcctgtggaaacaaattttgacaaataaaataagctcttg |
34036775 |
T |
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| Q |
246 |
ttcttttatgcaaatacatcatcacttaacttcaa |
280 |
Q |
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| T |
34036774 |
ttgttttttgcaaatacataatcaattgacttcaa |
34036740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 34036741 - 34036683
Alignment:
| Q |
232 |
aaaataagctcttgttcttttatgcaaatacatcatcacttaacttcaatcaagcacat |
290 |
Q |
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|||||||||||||||| |||| ||||||||||| |||| || |||||||| |||||||| |
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| T |
34036741 |
aaaataagctcttgttgttttttgcaaatacataatcaattgacttcaattaagcacat |
34036683 |
T |
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