View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18949_high_9 (Length: 316)
Name: NF18949_high_9
Description: NF18949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18949_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 42340857 - 42340553
Alignment:
| Q |
1 |
gttgccaattcatctcaccttctcttaccaccatattcttctgtttgtcttgttttcagcactgcaccaggcattatatttgtcaacactcgcaacaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
42340857 |
gttgccaattcatctcaccttctcttaccaccatattcttctgcttgtcttattttcagcactgcaccagacattatatttgtcaacactcgtaacaaaa |
42340758 |
T |
|
| Q |
101 |
aagcacatcaacaacataattattagattaataatccaatgtaatatgaaaagactttttaaaacacatcaataatttgtgaatgcaagaattcaaatca |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42340757 |
aagcacattaacaacataattattagattaataatacaatgtaatatgaaaagactttttaaaacacatcaataatttgtgaatgcaagaattcaaatca |
42340658 |
T |
|
| Q |
201 |
atgcaaacttgatcaaacaaaaaactctgttaacgacaaataagtcaacataagctttttgttaacaaagaaccttaacaaatgttagattcctttgtct |
300 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42340657 |
atgcaaagttgatcaaacaaaaaactttgttaacgacaaataagtcaacataagctttttgttaacaaagaaccttaacaaatgttagattcctttgtct |
42340558 |
T |
|
| Q |
301 |
ctttc |
305 |
Q |
| |
|
||||| |
|
|
| T |
42340557 |
ctttc |
42340553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University