View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18949_low_12 (Length: 311)
Name: NF18949_low_12
Description: NF18949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18949_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 44227621 - 44227906
Alignment:
| Q |
18 |
gaatatataggagtttacagaacggaaatcgattctcggcagcacaaggttacggttactggcaacgttgacgctgagactctcatcaagaagctttcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44227621 |
gaatatataggagtttacagaacggaaatcgattctcggcagcacaaggttacggttactggcaacgttgacgctgagactctcatcaagaagctttcaa |
44227720 |
T |
|
| Q |
118 |
gatctgggaaatcagtagaactttggccagaaaagcctcctgagaagaaagataaaaaatcttcaaaatcaaagggtgaaactgaaaatattattaataa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44227721 |
gatctgggaaatcagtagaactttggccagaaaagcctcctgagaagaaagataaaaaatcttcaaaatcaaagggtgaaactgaaaatattattaataa |
44227820 |
T |
|
| Q |
218 |
ggagatcaaggaagatcagaagaatagtactgaacaaattggtgaaagtagtcatgaaggttgcatagatgatgcaggtgatgatg |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44227821 |
ggagatcaaggaagatcagaagaatagtactgaacatattggtgaaagtagtcatgaaggttgcatagatgatgcaggtgatgatg |
44227906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University