View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18949_low_13 (Length: 284)

Name: NF18949_low_13
Description: NF18949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18949_low_13
NF18949_low_13
[»] chr5 (19 HSPs)
chr5 (11-262)||(9850743-9850994)
chr5 (11-173)||(19605997-19606159)
chr5 (11-173)||(9825015-9825178)
chr5 (12-167)||(10558818-10558973)
chr5 (11-176)||(9836457-9836622)
chr5 (11-173)||(10747147-10747309)
chr5 (12-173)||(10611626-10611787)
chr5 (11-175)||(7192920-7193084)
chr5 (11-166)||(10564942-10565097)
chr5 (21-176)||(10588559-10588714)
chr5 (11-173)||(10740831-10740993)
chr5 (12-173)||(10580920-10581081)
chr5 (20-173)||(10216881-10217034)
chr5 (36-173)||(10604692-10604829)
chr5 (36-173)||(11048789-11048926)
chr5 (12-167)||(10763271-10763426)
chr5 (11-173)||(10717072-10717234)
chr5 (11-167)||(10550699-10550855)
chr5 (230-262)||(10430342-10430374)
[»] chr4 (1 HSPs)
chr4 (171-265)||(1330498-1330589)
[»] chr6 (5 HSPs)
chr6 (17-173)||(12899491-12899647)
chr6 (11-167)||(12932194-12932350)
chr6 (11-167)||(12948559-12948715)
chr6 (11-167)||(12957993-12958149)
chr6 (51-167)||(12907146-12907261)
[»] chr2 (1 HSPs)
chr2 (11-167)||(17923541-17923697)
[»] chr3 (2 HSPs)
chr3 (12-167)||(31467300-31467455)
chr3 (225-262)||(20700493-20700530)
[»] scaffold0692 (1 HSPs)
scaffold0692 (66-167)||(7264-7364)
[»] chr8 (1 HSPs)
chr8 (77-175)||(28605608-28605705)


Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 9850994 - 9850743
Alignment:
Q  11 gggagttcacaagagttttattacggaatgtaatgccctcaaaatattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattaca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9850994 gggagttcacaagagttttattacggaatgtaatgccctcaaaatattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattaca 9850895  T
Q  111 aagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttagaataatggcttgtcaaattggggcaaacttgttttcttggctgga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9850894 aagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttagaacaatggcttgtcaaattggggcaaacttgttttcttggctgga 9850795  T
Q  211 gttctccttcattgttccaccaaatttatttattcattgggaatgttggagt 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9850794 gttctccttcattgttccaccaaatttatttattcattgggaatgttggagt 9850743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 19606159 - 19605997
Alignment:
Q  11 gggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 109  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||||||| ||| ||    
T  19606159 gggagctcacaagagttttattactgaatgtaatgctctcaaaaatattagacatcgaaatttagttaagattttaacttgttgttctagtattgataac 19606060  T
Q  110 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttagaataatgg 173  Q
    ||||| |  |||||| ||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  19606059 aaaggtctagaattc-aaagctctagtttttgagtacatgagaaatggaagcttagaacaatgg 19605997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 9825015 - 9825178
Alignment:
Q  11 gggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 109  Q
    ||||| |||||||||||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||||| | || ||||||||||||||||    
T  9825015 gggagctcacaagagttttattaccgaatgtaatgaactcaaaaatattagacatcgaaatttggttaagattttaacatgtttttctagtatcgattac 9825114  T
Q  110 aaagggcatgaattcaaaagctctagttttttagtacatgataaat-ggaagcttagaataatgg 173  Q
    |||||||| |||||| ||||||||||||||| ||||||||  |||| |||||||||||| |||||    
T  9825115 aaagggcaagaattc-aaagctctagtttttgagtacatgcaaaatgggaagcttagaacaatgg 9825178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 10558818 - 10558973
Alignment:
Q  12 ggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattaca 110  Q
    |||| |||||||||||||||||| ||||||||||| || |||| |||||||||||||||| |||||||||||||||||| |||||||||||| |||||||    
T  10558818 ggagctcacaagagttttattaccgaatgtaatgcactaaaaaatattagacatcgaaatctggttaagattttaacttgttgttctagtattgattaca 10558917  T
Q  111 aagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttagaa 167  Q
    |||| || |||||| ||||||||||||||| | ||||||| ||||||||||||||||    
T  10558918 aaggtcaggaattc-aaagctctagtttttgaatacatgaaaaatggaagcttagaa 10558973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 9836622 - 9836457
Alignment:
Q  11 gggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 109  Q
    ||||| ||| |||||||||||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || |||| | |||||||||||| |||||     
T  9836622 gggagctcataagagttttattgctgaatgtaatgcactcaaaaatattagacatcgaaatttggtcaaggttataacatgttgttctagtattgattat 9836523  T
Q  110 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttagaataatggctt 176  Q
    |||||    |||||  |||||| |||||||| | ||||||| |||||||||||||||| ||||||||    
T  9836522 aaaggtggagaatt-taaagctttagtttttgattacatgaaaaatggaagcttagaacaatggctt 9836457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 10747309 - 10747147
Alignment:
Q  11 gggagttcacaagagttttattacggaatgtaatgccctcaa-aatattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 109  Q
    ||||| |||||||||||| |||   ||||||||||  ||||| || |||||||| |||||||| |||||||||||||| | |||||||||||| ||||||    
T  10747309 gggagctcacaagagtttcattgttgaatgtaatgtactcaagaacattagacaccgaaatttagttaagattttaacgtgttgttctagtatagattac 10747210  T
Q  110 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttagaataatgg 173  Q
    ||||  || || ||  ||||||||||||||||| ||||| | |||||||||||||||| |||||    
T  10747209 aaagttcaggagtt-taaagctctagttttttattacataaaaaatggaagcttagaacaatgg 10747147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 10611626 - 10611787
Alignment:
Q  12 ggagttcacaagagttttattacggaatgtaatgccctcaaaat-attagacatcgaaatttggttaagattttaacttcttgttctagtatcgattaca 110  Q
    |||| |||||||||||| |||   ||||||||||| || ||| | |||||||| |||||||| |||||||||||||| | |||||||||||  |||||||    
T  10611626 ggagctcacaagagtttcattgttgaatgtaatgcactaaaatttattagacaccgaaatttagttaagattttaacatgttgttctagtacagattaca 10611725  T
Q  111 aagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttagaataatgg 173  Q
    |||| || |||||  ||||| ||||||||| | ||||||| |||||||||||||||| |||||    
T  10611726 aaggtcaagaatt-taaagccctagtttttgattacatgaaaaatggaagcttagaacaatgg 10611787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 7192920 - 7193084
Alignment:
Q  11 gggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 109  Q
    ||||| |||||||||||| ||| | ||||||||||| || |||| |||||||||||||||||||||||||||||| || | |||||| ||||  ||||||    
T  7192920 gggagctcacaagagtttcattgctgaatgtaatgcactaaaaaatattagacatcgaaatttggttaagattttgacatgttgttccagtacagattac 7193019  T
Q  110 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttagaataatggct 175  Q
    ||||| || |||||  |||||| |||| ||| | |||||||  || |||||||||||| |||||||    
T  7193020 aaaggtcaagaatt-taaagctttagtctttgaatacatgaacaacggaagcttagaacaatggct 7193084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 10564942 - 10565097
Alignment:
Q  11 gggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 109  Q
    ||||| |||||||||||| |||   ||||||||||| ||||||| |||| |||| |||||||| |||||| ||||||| | |||||| ||||  ||||||    
T  10564942 gggagctcacaagagtttcattgttgaatgtaatgcactcaaaaatattcgacaccgaaatttagttaaggttttaacctgttgttcaagtacagattac 10565041  T
Q  110 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttaga 166  Q
    ||||| || |||||  |||||||| |||||| ||||||||| |||||||||||||||    
T  10565042 aaaggtcaagaatt-taaagctctggtttttgagtacatgaaaaatggaagcttaga 10565097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 10588714 - 10588559
Alignment:
Q  21 aagagttttattacggaatgtaatgccctcaa-aatattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattacaaagggcatg 119  Q
    |||||||||||| | ||||||||||| ||||| ||| ||||||||||||||||||  ||||||||||| | ||||||| |||  ||||| ||||| || |    
T  10588714 aagagttttattgccgaatgtaatgcactcaagaatgttagacatcgaaatttggccaagattttaacatgttgttctggtactgattataaaggtcaag 10588615  T
Q  120 aattcaaaagctctagttttttagtacatgataaatggaagcttagaataatggctt 176  Q
    ||||  |||||| |||||||| | ||||||| ||||||||| |||||| ||||||||    
T  10588614 aatt-taaagctttagtttttgattacatgaaaaatggaagtttagaacaatggctt 10588559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 10740993 - 10740831
Alignment:
Q  11 gggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 109  Q
    ||||| |||||||||||| |||   ||||||||||| ||||||| ||||||||| |||||||| ||||||||||| || | |||||||||||  ||||||    
T  10740993 gggagctcacaagagtttcattgttgaatgtaatgcactcaaaaatattagacaccgaaatttagttaagattttgacatgttgttctagtacagattac 10740894  T
Q  110 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttagaataatgg 173  Q
    ||||| ||  | ||  |||||||| |||||| | ||||||| |||||||||||||||| |||||    
T  10740893 aaaggtca-aacttttaaagctcttgtttttgattacatgaaaaatggaagcttagaacaatgg 10740831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 10580920 - 10581081
Alignment:
Q  12 ggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattaca 110  Q
    |||| ||||||||||||||||   ||||||||||| ||||||| ||||||||| | |||||| || ||| || |||| | |||||||||||   ||||||    
T  10580920 ggagctcacaagagttttattgttgaatgtaatgcactcaaaaatattagacaccaaaatttagtcaaggttctaacatgttgttctagtacaaattaca 10581019  T
Q  111 aagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttagaataatgg 173  Q
    |||| || ||||| ||| ||| |||||||||| ||||||| |||||||||||||||| |||||    
T  10581020 aaggccaagaatttaaa-gctttagttttttattacatgaaaaatggaagcttagaacaatgg 10581081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 10217034 - 10216881
Alignment:
Q  20 caagagttttattacggaatgtaatgccctcaaaat-attagacatcgaaatttggttaagattttaacttcttgttctagtatcgattacaaagggcat 118  Q
    |||||||||||||   ||||||||||| |||||||  |||||||| ||||| |  |||||| ||||||| | |||||||||||   | |||||||| ||     
T  10217034 caagagttttattgttgaatgtaatgcactcaaaaacattagacaccgaaactcagttaaggttttaacatgttgttctagtacaaactacaaaggtcaa 10216935  T
Q  119 gaattcaaaagctctagttttttagtacatgataaatggaagcttagaataatgg 173  Q
    ||||| ||| |||||||||||||| ||||||| |||||||||||||||| |||||    
T  10216934 gaatttaaa-gctctagttttttattacatgaaaaatggaagcttagaacaatgg 10216881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 36 - 173
Target Start/End: Original strand, 10604692 - 10604829
Alignment:
Q  36 gaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattacaaagggcatgaattcaaaagctcta 134  Q
    ||||||||||| ||||||| ||| ||||| || ||||| ||| |  ||||||| | |||||||||||  ||||||||||| || ||||| ||| ||||||    
T  10604692 gaatgtaatgcactcaaaactataagacaccggaatttagttcaagttttaacatgttgttctagtacagattacaaaggtcaagaatttaaa-gctcta 10604790  T
Q  135 gttttttagtacatgataaatggaagcttagaataatgg 173  Q
    |||||| | ||||||| |||||||||||||||| |||||    
T  10604791 gtttttgattacatgaaaaatggaagcttagaacaatgg 10604829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 11048926 - 11048789
Alignment:
Q  36 gaatgtaatgccctcaaaat-attagacatcgaaatttggttaagattttaacttcttgttctagtatcgattacaaagggcatgaattcaaaagctcta 134  Q
    ||||||||||| |||||||  |||||||| ||||| || |||||| ||||||| | |||||||||||  |||||||||||  | ||||| ||| || |||    
T  11048926 gaatgtaatgcactcaaaaacattagacaccgaaacttagttaaggttttaacctgttgttctagtacagattacaaaggtgaagaatttaaa-gcacta 11048828  T
Q  135 gttttttagtacatgataaatggaagcttagaataatgg 173  Q
    |||||| | ||||||| |||||||||||||||| |||||    
T  11048827 gtttttgattacatgaaaaatggaagcttagaacaatgg 11048789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 10763426 - 10763271
Alignment:
Q  12 ggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattaca 110  Q
    |||| |||||||||||| |||   ||||||||||| || |||| ||||  ||| || ||||| |||||||||||||| | |||||||||||  ||||| |    
T  10763426 ggagctcacaagagtttcattgttgaatgtaatgcactaaaaaatattcaacaccggaatttagttaagattttaacatgttgttctagtactgattata 10763327  T
Q  111 aagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttagaa 167  Q
    |||| || ||||| ||| ||||| |||||| | ||||||| ||||||||||||||||    
T  10763326 aaggtcaagaatttaaa-gctctggtttttgattacatgaaaaatggaagcttagaa 10763271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 10717234 - 10717072
Alignment:
Q  11 gggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 109  Q
    ||||| |||||||||||| |||   ||||||||||| || |||| ||| ||||| |||||| | || ||||| ||||| | |||||||||||  ||||||    
T  10717234 gggagctcacaagagtttcattgttgaatgtaatgcactaaaaaatatcagacaccgaaatctagtgaagatattaacatgttgttctagtacagattac 10717135  T
Q  110 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttagaataatgg 173  Q
    ||||| ||  | ||  ||||||||||||||| | ||||||| |||||||||||||||| |||||    
T  10717134 aaaggtcaa-acttttaaagctctagtttttgattacatgaaaaatggaagcttagaacaatgg 10717072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 10550699 - 10550855
Alignment:
Q  11 gggagttcacaagagttttattacggaatgtaatgccct-caaaatattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 109  Q
    |||||||||||||||||| ||| | ||||||||||| ||  |||||||||| ||  ||||| | ||||| ||||| |||| |||||| || |  ||||||    
T  10550699 gggagttcacaagagtttcattgctgaatgtaatgcactaaaaaatattaggcacagaaatctagttaaaattttgacttgttgttccagcacagattac 10550798  T
Q  110 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttagaa 167  Q
    |||||   ||| ||  |||||||| || ||| ||||||||| |||||||| |||||||    
T  10550799 aaaggaagtgagtt-taaagctcttgtatttgagtacatgagaaatggaaacttagaa 10550855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 262
Target Start/End: Original strand, 10430342 - 10430374
Alignment:
Q  230 ccaaatttatttattcattgggaatgttggagt 262  Q
    |||||||| ||||||||||||||||||||||||    
T  10430342 ccaaatttgtttattcattgggaatgttggagt 10430374  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 1330589 - 1330498
Alignment:
Q  171 tggcttgtcaaattggggcaaacttgttttcttggctggagttctccttcattgttccaccaaatttatttattcattgggaatgttggagtagg 265  Q
    ||||||| |||||| |||| |||||||||||||||||||||||||   || |||||||||||||||| |||||||||||||||||||||||||||    
T  1330589 tggcttgccaaatttgggctaacttgttttcttggctggagttct---tcgttgttccaccaaatttctttattcattgggaatgttggagtagg 1330498  T

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Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 12899491 - 12899647
Alignment:
Q  17 tcacaagagttttattacggaatgtaatgccctcaaaat-attagacatcgaaatttggttaagattttaacttcttgttctagtatcgattacaaaggg 115  Q
    |||||||||||| |||   ||||||||||| |||||||  ||| |||| ||||||||||||||| ||||||| | ||||||||| |   ||||||||||     
T  12899491 tcacaagagtttcattttagaatgtaatgcactcaaaaacattcgacaccgaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggt 12899590  T
Q  116 catgaattcaaaagctctagttttttagtacatgataaatggaagcttagaataatgg 173  Q
    || ||||| ||| |||||||||||| | ||||||| |||||||||||||||| |||||    
T  12899591 caagaatttaaa-gctctagtttttgaatacatgaaaaatggaagcttagaacaatgg 12899647  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 12932194 - 12932350
Alignment:
Q  11 gggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 109  Q
    ||||| |||||||||||| |||   |||||||| || ||||||| ||||||||| ||||||||||||||| ||||||| | ||||||||| |   |||||    
T  12932194 gggagctcacaagagtttcattgttgaatgtaacgcactcaaaaatattagacaccgaaatttggttaaggttttaacatgttgttctagcacaaattac 12932293  T
Q  110 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttagaa 167  Q
    ||||| || |||||  ||||| ||||||||| | ||||||| ||||||||||||||||    
T  12932294 aaaggtcaagaatt-taaagcactagtttttgaatacatgaaaaatggaagcttagaa 12932350  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 12948559 - 12948715
Alignment:
Q  11 gggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 109  Q
    ||||| |||||||||||| |||   ||||||||||| || |||| ||||||||| ||||||||||||||| ||||||| | ||||||||| |   || ||    
T  12948559 gggagctcacaagagtttcattgttgaatgtaatgcactaaaaaatattagacaccgaaatttggttaaggttttaacatgttgttctagcacaaataac 12948658  T
Q  110 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttagaa 167  Q
    ||||| || |||||  ||||||||||||||| | ||||||| ||||||||||||||||    
T  12948659 aaaggccaagaatt-taaagctctagtttttgaatacatgaaaaatggaagcttagaa 12948715  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 12957993 - 12958149
Alignment:
Q  11 gggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 109  Q
    ||||| |||||||||||| |||   |||||||| || ||||||| ||||||||| ||||||||||||| | ||||||| | ||||||||| |   |||||    
T  12957993 gggagctcacaagagtttcattgttgaatgtaacgcactcaaaaatattagacaccgaaatttggttagggttttaacatgttgttctagcacaaattac 12958092  T
Q  110 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttagaa 167  Q
    ||||| || |||||  ||||||||||||||| | ||||||  ||||||||||||||||    
T  12958093 aaaggtcaagaatt-taaagctctagtttttgaatacatggaaaatggaagcttagaa 12958149  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 167
Target Start/End: Original strand, 12907146 - 12907261
Alignment:
Q  51 aaaatattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattacaaagggcatgaattcaaaagctctagttttttagtacatga 150  Q
    |||||||||||||  |||||||||||||| ||||||| | ||||||||| |   |||||||||| || ||||| ||| |||||||||||| | |||||||    
T  12907146 aaaatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaa-gctctagtttttgaatacatga 12907244  T
Q  151 taaatggaagcttagaa 167  Q
     ||||||||||||||||    
T  12907245 aaaatggaagcttagaa 12907261  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 17923697 - 17923541
Alignment:
Q  11 gggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 109  Q
    ||||| ||||||||||||  ||   |||||||| || ||||||| ||||||||| ||||||||||||||| ||||||| | ||||||||| |   |||||    
T  17923697 gggagctcacaagagtttcgttgttgaatgtaacgcactcaaaaatattagacaccgaaatttggttaaggttttaacatgttgttctagcacaaattac 17923598  T
Q  110 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttagaa 167  Q
    ||||| || |||||  ||||||||||||||| | ||||||| ||||||||||||||||    
T  17923597 aaaggtcaagaatt-taaagctctagtttttgaatacatgaaaaatggaagcttagaa 17923541  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 31467455 - 31467300
Alignment:
Q  12 ggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattaca 110  Q
    |||| ||||||||||||  || | ||||| ||||| ||||||| ||||||||| |||||||||||||||||||||||    ||||| ||||  |||| ||    
T  31467455 ggagctcacaagagtttccttgctgaatgcaatgcactcaaaaatattagacaccgaaatttggttaagattttaacaagctgttccagtacagatttca 31467356  T
Q  111 aagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttagaa 167  Q
    |||  || |||||  |||||||| |||||  ||||||||| ||| ||||||||||||    
T  31467355 aagatcaagaatt-taaagctcttgttttcgagtacatgaaaaacggaagcttagaa 31467300  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 20700493 - 20700530
Alignment:
Q  225 ttccaccaaatttatttattcattgggaatgttggagt 262  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  20700493 ttcctccaaatttatttgttcattgggaatgttggagt 20700530  T

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Target: scaffold0692 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 167
Target Start/End: Original strand, 7264 - 7364
Alignment:
Q  66 gaaatttggttaagattttaacttcttgttctagtatcgattacaaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttag 165  Q
    |||||||||||| | ||||||| | ||||||||| |   |||||||||| || ||||| ||| |||||||||||| | ||||||| ||||||||||||||    
T  7264 gaaatttggttagggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaa-gctctagtttttgaatacatgaaaaatggaagcttag 7362  T
Q  166 aa 167  Q
    ||    
T  7363 aa 7364  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 28605608 - 28605705
Alignment:
Q  77 aagattttaacttcttgttctagtatcgattacaaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagcttagaataatggct 175  Q
    ||||||||||| | |||||| ||||| |||||||| ||  |||||||| |||||| |||||||| ||||||||  ||||||||| |||||  |||||||    
T  28605608 aagattttaacatgttgttcaagtatggattacaatggtaatgaattc-aaagctttagtttttgagtacatggaaaatggaagtttagataaatggct 28605705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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