View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18949_low_18 (Length: 249)
Name: NF18949_low_18
Description: NF18949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18949_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 35808883 - 35808651
Alignment:
| Q |
1 |
ccaaattgtatatttgcgccatactttcgctccgatgagtgcaagaaattcgcgaaagttcacaaagtatttggagcaagcaatgtgagcaagattctga |
100 |
Q |
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| T |
35808883 |
ccaaattgtatatttgcgccatactttcgctccgatgagtgcaagaaattcgcgaaagttcacaaagtatttggagcaagcaatgtgagcaagattctga |
35808784 |
T |
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| Q |
101 |
ttgaagttccagaggaacaaagggaagaaactgtgaattctttggcttatgaagctgatgcaaggcttagagaccctgtctatggatgcataggtgctat |
200 |
Q |
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| T |
35808783 |
ttgaagttccagaggaacaaagggaagaaactgtgaattctttggcttatgaagctgatgcaaggcttagagaccctgtctatggatgcataggtgctat |
35808684 |
T |
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| Q |
201 |
agcacttttgcaaaggaagatggttgaacttca |
233 |
Q |
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| T |
35808683 |
agcacttttgcaaaggaagatggttgaacttca |
35808651 |
T |
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Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 35 - 233
Target Start/End: Complemental strand, 32036482 - 32036284
Alignment:
| Q |
35 |
atgagtgcaagaaattcgcgaaagttcacaaagtatttggagcaagcaatgtgagcaagattctgattgaagttccagaggaacaaagggaagaaactgt |
134 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||| ||||||| ||||| || || |
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| T |
32036482 |
atgagtgcaagaaattcgccaaagttcacaaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaaacaaagagaagacacagt |
32036383 |
T |
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| Q |
135 |
gaattctttggcttatgaagctgatgcaaggcttagagaccctgtctatggatgcataggtgctatagcacttttgcaaaggaagatggttgaacttca |
233 |
Q |
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||||||| | |||||||||||||| ||||||||||||||||| || || |||||||| ||| | ||||| | ||||||||||||||| | |||||||| |
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| T |
32036382 |
gaattctcttgcttatgaagctgaagcaaggcttagagacccagtttacggatgcattggttccatagctatgttgcaaaggaagatgatggaacttca |
32036284 |
T |
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