View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18949_low_21 (Length: 226)
Name: NF18949_low_21
Description: NF18949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18949_low_21 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 26707498 - 26707306
Alignment:
| Q |
34 |
tgctgcaatgattctgattgaggattgatttgctacaattatttagattgaagaattattcgatgatttatataaatgtgatgttgaatcttgttgaaat |
133 |
Q |
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| T |
26707498 |
tgctgcaatgattctgattgaggattgatttgctacaattatttagattgaagaattattcgatgatttatataaatgtgatgttgaatcttgttgaaat |
26707399 |
T |
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| Q |
134 |
gaaattttagtatacaacatatatacgagaactatggagtttgagatattggttggactattaatatgtgttgatgaaaatatgatatgtgaa |
226 |
Q |
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| T |
26707398 |
gaaattttagtatgcaacatatatacgaggactatggagtttgagatattggttggactattaatatgtgttgacgaaaatatgatatgtgaa |
26707306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 79 - 226
Target Start/End: Original strand, 7902608 - 7902755
Alignment:
| Q |
79 |
gattgaagaattattcgatgatttatataaatgtgatgttgaatcttgttgaaatgaaattttagtatacaacatatatacgagaactatggagtttgag |
178 |
Q |
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| T |
7902608 |
gattgatgaattatttgataattgatgtaaatgtgatgttgactcttgttgaaatgaatttttggtatgcaacatatatatgatgactatggatattgag |
7902707 |
T |
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| Q |
179 |
atattggttggactattaatatgtgttgatgaaaatatgatatgtgaa |
226 |
Q |
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| T |
7902708 |
atattggttggactatgaatatgtgttgttgaaaatattatatgtgaa |
7902755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 22521996 - 22521936
Alignment:
| Q |
58 |
ttgatttgctacaattatttagattgaagaattattcgatgatttatataaatgtgatgtt |
118 |
Q |
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| T |
22521996 |
ttgatttgccgcaattttttggattgattaattattcaatgattgatataaatgtgatgtt |
22521936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 34488229 - 34488150
Alignment:
| Q |
80 |
attgaagaattattcgatgatttatataaatgtgatgttgaatcttgttgaaatgaaattttagtatacaacatatatac |
159 |
Q |
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| T |
34488229 |
attgatgaattattcgatgatgaatataaaagtgatgttgaatcttattgaaatgaattttcgatatgcaacatatatac |
34488150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 34488147 - 34488098
Alignment:
| Q |
177 |
agatattggttggactattaatatgtgttgatgaaaatatgatatgtgaa |
226 |
Q |
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| T |
34488147 |
agatattagttggacgatgaatatgtgttgttgaaaatatgatatgtgaa |
34488098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 22395176 - 22395236
Alignment:
| Q |
58 |
ttgatttgctacaattatttagattgaagaattattcgatgatttatataaatgtgatgtt |
118 |
Q |
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| T |
22395176 |
ttgatttgctgcaactatttagattgatgacttatttaatgattgatataaatgtgatgtt |
22395236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 16067775 - 16067835
Alignment:
| Q |
58 |
ttgatttgctacaattatttagattgaagaattattcgatgatttatataaatgtgatgtt |
118 |
Q |
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| T |
16067775 |
ttgatttgctgcaactatttagattgatgacttatttaatgattgatatagatgtgatgtt |
16067835 |
T |
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