View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_high_10 (Length: 495)
Name: NF1894_high_10
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 11 - 479
Target Start/End: Complemental strand, 2677898 - 2677430
Alignment:
| Q |
11 |
catcatcagcactcttccatgatgtcaaatatctatcaagacctgaggccttatcccaacccaacttcatgccaggtaacattgtgtctgtaggataatc |
110 |
Q |
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| T |
2677898 |
catcatcagcactcttccatgatgtcaaatatctatcaagacctgaggccttatcccaacccaacttcatgccaggtaacattgtgtctgtaggataatc |
2677799 |
T |
|
| Q |
111 |
aaagctttgccatatgtaactattagaatcatggttctttccatccatcaagaccaagtttccagaatctaacaactttgcaagtggctcctgaattgac |
210 |
Q |
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| T |
2677798 |
aaagctttgccatatgtaactattagaatcatggttctttccatccatcaagaccaagtttccagaatctaacaactttgcaagtggctcctgaattgac |
2677699 |
T |
|
| Q |
211 |
cttgatgaatttgtataccatattttgttacctactccatcgacaagtaaaatattcccatcagcaccaattgttaagtttccacttgagttattaagtg |
310 |
Q |
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| T |
2677698 |
cttgatgaatttgtataccatattttgttacctactccatcgacaagtaaaatattcccatcagcaccaattgttaagtttccacttgagttattaagtg |
2677599 |
T |
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| Q |
311 |
gtttttctctgtttgcaacccaaacaactgtttgaggtgtgatattcttgtaccatatccccaagtagtactttttggagcttcctgggctgaagaaacc |
410 |
Q |
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| T |
2677598 |
gtttttctctgtttgcaacccaaacaactgtttgaggtgtgatattcttgtaccatatccccaagtagtactttttggagcttcctgggctgaagaaacc |
2677499 |
T |
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| Q |
411 |
aagacaaaaaatttgtccagctgaaataagttcttgaccatctacaattgaagaattttgagtcaaggt |
479 |
Q |
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| T |
2677498 |
aagacaaaaaatttgtccagctgaaataagttcttggccatctataattgaagaattttgagtcaaggt |
2677430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 85 - 233
Target Start/End: Original strand, 3052682 - 3052836
Alignment:
| Q |
85 |
ggtaacattgtgtctgtaggataatcaa----agctttgccatatgtaactattagaatcatggt--tctttccatccatcaagaccaagtttccagaat |
178 |
Q |
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||||||||||||||||| |||||||||| ||||||||||| || || || ||||||||| | ||| ||||||| ||||||||||||||||||||| |
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| T |
3052682 |
ggtaacattgtgtctgttggataatcaatcaaagctttgccatgtgcaattagaagaatcatgttaatctctccatccttcaagaccaagtttccagaat |
3052781 |
T |
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| Q |
179 |
ctaacaactttgcaagtggctcctgaattgaccttgatgaatttgtataccatat |
233 |
Q |
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|||||| |||||||||||||| |||||||| | ||||||||||||| ||||||| |
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| T |
3052782 |
ctaacatttttgcaagtggctcttgaattgatcctgatgaatttgtagaccatat |
3052836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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