View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1894_high_13 (Length: 456)

Name: NF1894_high_13
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1894_high_13
NF1894_high_13
[»] chr4 (12 HSPs)
chr4 (181-360)||(24993232-24993410)
chr4 (225-308)||(7259781-7259864)
chr4 (1-46)||(24993040-24993085)
chr4 (103-139)||(24993142-24993178)
chr4 (238-306)||(35415714-35415782)
chr4 (262-345)||(37061944-37062027)
chr4 (253-351)||(32439864-32439962)
chr4 (257-364)||(4965070-4965177)
chr4 (219-308)||(44434000-44434089)
chr4 (268-308)||(35196743-35196783)
chr4 (269-317)||(37311038-37311086)
chr4 (219-303)||(48215734-48215818)
[»] chr8 (6 HSPs)
chr8 (224-363)||(24585566-24585705)
chr8 (192-346)||(35205391-35205544)
chr8 (192-308)||(43012716-43012831)
chr8 (256-308)||(10658622-10658674)
chr8 (256-328)||(12468882-12468954)
chr8 (300-364)||(35205389-35205453)
[»] chr6 (5 HSPs)
chr6 (216-363)||(6560211-6560358)
chr6 (255-345)||(26472671-26472761)
chr6 (219-308)||(26281060-26281149)
chr6 (267-308)||(18688966-18689007)
chr6 (272-308)||(10663912-10663948)
[»] chr3 (5 HSPs)
chr3 (257-312)||(38207310-38207365)
chr3 (227-308)||(49828171-49828252)
chr3 (182-251)||(9174178-9174247)
chr3 (262-335)||(51460163-51460236)
chr3 (219-308)||(52659965-52660053)
[»] chr5 (7 HSPs)
chr5 (192-308)||(32077914-32078030)
chr5 (255-312)||(34873525-34873582)
chr5 (263-328)||(37866914-37866979)
chr5 (258-308)||(20895404-20895454)
chr5 (219-308)||(20906292-20906381)
chr5 (257-308)||(20919573-20919624)
chr5 (257-363)||(35503511-35503617)
[»] chr7 (2 HSPs)
chr7 (257-363)||(26387654-26387760)
chr7 (261-308)||(3265329-3265376)
[»] scaffold0061 (1 HSPs)
scaffold0061 (257-310)||(63618-63671)
[»] scaffold0017 (1 HSPs)
scaffold0017 (257-310)||(134961-135014)
[»] chr2 (3 HSPs)
chr2 (255-307)||(37141226-37141278)
chr2 (259-345)||(16427784-16427870)
chr2 (269-351)||(27002519-27002601)
[»] scaffold0002 (1 HSPs)
scaffold0002 (256-336)||(427570-427650)
[»] scaffold0265 (1 HSPs)
scaffold0265 (266-308)||(9812-9854)
[»] chr1 (3 HSPs)
chr1 (266-308)||(21822955-21822997)
chr1 (267-351)||(5207574-5207658)
chr1 (219-291)||(34738712-34738783)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 3e-80; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 181 - 360
Target Start/End: Original strand, 24993232 - 24993410
Alignment:
Q  181 tttaattttaaagtttaatgatgatgagttgatgatataaaacaattttgcacacgtaatcaatccaaatactatgaattgccacgtaaattaaaaacat 280  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  24993232 tttaattttaaagtttaatgatgatgagttgatgatacaaaacaattttgcacacataatcaatcaaaatactatgaattgccacgtaaattaaaaacat 24993331  T
Q  281 taaatgatgtgataattctaaatgtttttattaattataggtgcaaaactattttgaaccgtcaatccaccgtcattaaa 360  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  24993332 taaatgatgtgacaattctaaatgtttttattaattataggtgcaaaactattttgaactgtcaa-ccaccgtcattaaa 24993410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 225 - 308
Target Start/End: Complemental strand, 7259864 - 7259781
Alignment:
Q  225 attttgcacacgtaatcaatccaaatactatgaattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttt 308  Q
    |||||||||||| |||||||| ||||| | ||||||| ||||||||||||||| ||||| |||| ||| |||||||||||||||    
T  7259864 attttgcacacgcaatcaatcaaaatattttgaattgacacgtaaattaaaaatattaattgatatgacaattctaaatgtttt 7259781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24993040 - 24993085
Alignment:
Q  1 gagaaacacatttgtaaacacaattatgattttactacacacatag 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24993040 gagaaacacatttgtaaacacaattatgattttactacacacatag 24993085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 24993142 - 24993178
Alignment:
Q  103 ccggacatcattgaaattgaaaccattgtcttggtgt 139  Q
    |||||||||||||||||||||||||||||||||||||    
T  24993142 ccggacatcattgaaattgaaaccattgtcttggtgt 24993178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 35415714 - 35415782
Alignment:
Q  238 aatcaatccaaatactatgaattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtt 306  Q
    |||||||| ||| | ||||| ||| ||||||||||||||||||||| ||||||||  ||||||||||||    
T  35415714 aatcaatcaaaacattatgatttgacacgtaaattaaaaacattaattgatgtgacgattctaaatgtt 35415782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 345
Target Start/End: Complemental strand, 37062027 - 37061944
Alignment:
Q  262 ccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttttattaattataggtgcaaaactattttgaaccgtcaa 345  Q
    |||| |||||||||| |||||| |||||||| ||||||||||||||| |||  || |  |||||||||| ||||||| ||||||    
T  37062027 ccacataaattaaaatcattaattgatgtgacaattctaaatgttttgattggttgtgtgtgcaaaactgttttgaatcgtcaa 37061944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 351
Target Start/End: Complemental strand, 32439962 - 32439864
Alignment:
Q  253 tatgaattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttttattaattataggtgcaaaactattttgaaccgtcaatccacc 351  Q
    ||||| ||| ||||| ||| ||||| ||||| ||||||||||||||||||| |||| ||| |||  | || ||||||||||| | | ||||||||||||    
T  32439962 tatgagttgtcacgtgaataaaaaatattaattgatgtgataattctaaatattttgattgattgcatgttcaaaactatttcgcatcgtcaatccacc 32439864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 364
Target Start/End: Complemental strand, 4965177 - 4965070
Alignment:
Q  257 aattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttttattaattataggtgcaaaactattttgaaccgtcaatccaccgtcat 356  Q
    |||||||||||||||||| || ||||| ||||||||  ||| ||||| |||| ||| ||  |  ||| |||| ||||||| || ||||| ||||| ||||    
T  4965177 aattgccacgtaaattaacaatattaattgatgtgacgattataaatattttgattgatcgtttgtgtaaaattattttggactgtcaacccaccatcat 4965078  T
Q  357 taaactct 364  Q
    ||||||||    
T  4965077 taaactct 4965070  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 308
Target Start/End: Original strand, 44434000 - 44434089
Alignment:
Q  219 aaaacaattttgcacacgtaatcaatccaaatactatgaattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttt 308  Q
    ||||||| ||| ||||| ||||||||| ||| | || |||||| ||| ||||||||||| ||| | | |||||| || ||||||||||||    
T  44434000 aaaacaactttacacacataatcaatcaaaacattaagaattgacacataaattaaaaatatttattaatgtgacaactctaaatgtttt 44434089  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 35196743 - 35196783
Alignment:
Q  268 aaattaaaaacattaaatgatgtgataattctaaatgtttt 308  Q
    |||||||||||||||| |||||||  |||||||||||||||    
T  35196743 aaattaaaaacattaattgatgtgtcaattctaaatgtttt 35196783  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 37311038 - 37311086
Alignment:
Q  269 aattaaaaacattaaatgatgtgataattctaaatgtttttattaatta 317  Q
    ||||||||||||||| |||| |||||||| |||||||||| ||| ||||    
T  37311038 aattaaaaacattaattgatatgataattttaaatgttttaattgatta 37311086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 48215818 - 48215734
Alignment:
Q  219 aaaacaattttgcacacgtaatcaatccaaatactatgaattgccacgtaaattaaaaacattaaatgatgtgataattctaaat 303  Q
    ||||||||||||||||   |||||||  ||||| ||| | ||| ||| ||||| ||||||||||| ||||| || ||||||||||    
T  48215818 aaaacaattttgcacatacaatcaattaaaatattataagttgtcacataaataaaaaacattaattgatgcgacaattctaaat 48215734  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 224 - 363
Target Start/End: Original strand, 24585566 - 24585705
Alignment:
Q  224 aattttgcacacgtaatcaatccaaatactatgaattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttttattaattataggtg 323  Q
    ||||||| ||||  || ||||| ||||| ||||||||| ||||||||||||||||||||| |||| |   ||||||||||||||| |||| |||||  |     
T  24585566 aattttgtacacacaaccaatcaaaatattatgaattgtcacgtaaattaaaaacattaattgatttagcaattctaaatgttttgattagttatatata 24585665  T
Q  324 caaaactattttgaaccgtcaatccaccgtcattaaactc 363  Q
    ||||| | ||||  ||||||||||||||  ||||||||||    
T  24585666 caaaattgttttagaccgtcaatccaccaccattaaactc 24585705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 346
Target Start/End: Original strand, 35205391 - 35205544
Alignment:
Q  192 agtttaatgatgatgagttgatgatataaaacaattttgcacacgtaatcaatccaaatactatgaattgccacgtaaattaaaaacattaaatgatgtg 291  Q
    |||||||||||| || ||||| | | |||||||||||||||||   ||| |||| ||| | | ||||||| |||||||||||||| |||||| |||| ||    
T  35205391 agtttaatgatggtgggttgacggtctaaaacaattttgcacatacaattaatcaaaacatt-tgaattgtcacgtaaattaaaagcattaattgatatg 35205489  T
Q  292 ataattctaaatgtttttattaattataggtgcaaaactattttgaaccgtcaat 346  Q
     ||||| |||||||||| |||  || || |||||||| | ||||| |||||||||    
T  35205490 gtaattttaaatgttttaatttgttgtatgtgcaaaattgttttgtaccgtcaat 35205544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 308
Target Start/End: Original strand, 43012716 - 43012831
Alignment:
Q  192 agtttaatgatgatgagttgatgatataaaacaattttgcacacgtaatcaatccaaatactatgaattgccacgtaaattaaaaacattaaatgatgtg 291  Q
    ||||||||  ||||||||||||  |  ||||||| ||||||||| ||||||||| ||| | | ||||||||||| ||||||||||| || || ||||||     
T  43012716 agtttaatagtgatgagttgatagtccaaaacaactttgcacacataatcaatcaaaagattttgaattgccacataaattaaaaatatgaattgatgt- 43012814  T
Q  292 ataattctaaatgtttt 308  Q
    |  ||||||||||||||    
T  43012815 agcattctaaatgtttt 43012831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 10658674 - 10658622
Alignment:
Q  256 gaattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttt 308  Q
    |||||| ||||||||||||||||||||| || |||||| | ||||||||||||    
T  10658674 gaattgacacgtaaattaaaaacattaattgttgtgatgaatctaaatgtttt 10658622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 328
Target Start/End: Original strand, 12468882 - 12468954
Alignment:
Q  256 gaattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttttattaattataggtgcaaaa 328  Q
    ||||| |||| ||||||||||||||||| ||||||   |||| |||||||||| |||| || || ||||||||    
T  12468882 gaattaccacttaaattaaaaacattaattgatgtatcaattttaaatgttttaattagttgtatgtgcaaaa 12468954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 35205453 - 35205389
Alignment:
Q  300 aaatgtttttattaattataggtgcaaaactattttgaaccgtcaatccaccgtcattaaactct 364  Q
    ||||||||| ||||||| || |||||||| | ||||  |||||||| ||||| ||||||||||||    
T  35205453 aaatgttttgattaattgtatgtgcaaaattgttttagaccgtcaacccaccatcattaaactct 35205389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 216 - 363
Target Start/End: Original strand, 6560211 - 6560358
Alignment:
Q  216 tataaaacaattttgcacacgtaatcaatccaaatactatgaattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttttattaat 315  Q
    |||||||||| |||||||| |||||||||| ||||| | | || | ||||||||||||||| |||||| ||||||||  ||||||||| |||| ||| ||    
T  6560211 tataaaacaactttgcacatgtaatcaatcaaaatattttaaactaccacgtaaattaaaatcattaattgatgtgacgattctaaatattttaattgat 6560310  T
Q  316 tataggtgcaaaactattttgaaccgtcaatccaccgtcattaaactc 363  Q
    | |  ||| |||| ||||||  ||  |||||| ||| |||||||||||    
T  6560311 tgtgtgtgtaaaattattttagactatcaatctaccatcattaaactc 6560358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 345
Target Start/End: Original strand, 26472671 - 26472761
Alignment:
Q  255 tgaattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttttattaattataggtgcaaaactattttgaaccgtcaa 345  Q
    |||||| |||||||||||||||||||||| |||||||| ||||| ||||||||| ||| ||| || ||| |||| | |||||||| |||||    
T  26472671 tgaattcccacgtaaattaaaaacattaagtgatgtgacaattcaaaatgttttgattgattgtacgtgtaaaattgttttgaactgtcaa 26472761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 308
Target Start/End: Original strand, 26281060 - 26281149
Alignment:
Q  219 aaaacaattttgcacacgtaatcaatccaaatactatgaattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttt 308  Q
    ||||||| |||| ||| | |||||||| ||| | | | ||||||||||||||||| |||||||||  |||||| ||||||||||||||||    
T  26281060 aaaacaactttgaacaagcaatcaatcaaaacattttaaattgccacgtaaattagaaacattaatcgatgtggtaattctaaatgtttt 26281149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 308
Target Start/End: Original strand, 18688966 - 18689007
Alignment:
Q  267 taaattaaaaacattaaatgatgtgataattctaaatgtttt 308  Q
    ||||||||||||||||| |||||||| |||| ||||||||||    
T  18688966 taaattaaaaacattaattgatgtgacaattttaaatgtttt 18689007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 10663948 - 10663912
Alignment:
Q  272 taaaaacattaaatgatgtgataattctaaatgtttt 308  Q
    ||||||||||||||||||||  |||||||||||||||    
T  10663948 taaaaacattaaatgatgtggcaattctaaatgtttt 10663912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 257 - 312
Target Start/End: Original strand, 38207310 - 38207365
Alignment:
Q  257 aattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttttatt 312  Q
    ||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||    
T  38207310 aattgccacataaattaaaaacattaattgatgtgacaattctaaatgtttttatt 38207365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 308
Target Start/End: Original strand, 49828171 - 49828252
Alignment:
Q  227 tttgcacacgtaatcaatccaaatactatgaattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttt 308  Q
    |||||||||  |||||||  ||||| | ||||||||||||||||||||||||||||| | || ||| |||||||||||||||    
T  49828171 tttgcacacacaatcaattaaaatattttgaattgccacgtaaattaaaaacattaattcatatgacaattctaaatgtttt 49828252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 9174247 - 9174178
Alignment:
Q  182 ttaattttaaagtttaatgatgatgagttgatgatataaaacaattttgcacacgtaatcaatccaaata 251  Q
    |||||| || |||||||||||||||||||||||||  |||| ||||||||| || ||||||||| |||||    
T  9174247 ttaattatagagtttaatgatgatgagttgatgatccaaaataattttgcatacataatcaatcaaaata 9174178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 262 - 335
Target Start/End: Original strand, 51460163 - 51460236
Alignment:
Q  262 ccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttttattaattataggtgcaaaactatttt 335  Q
    |||| |||||||||| |||||| |||||||| |||||  |||||||| |||  ||||| |||||||||||||||    
T  51460163 ccacataaattaaaatcattaattgatgtgacaattcagaatgttttgattggttatatgtgcaaaactatttt 51460236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 308
Target Start/End: Complemental strand, 52660053 - 52659965
Alignment:
Q  219 aaaacaattttgcacacgtaatcaatccaaatactatgaattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttt 308  Q
    |||||||||||||||||  || ||||  || || || ||||||||||||||||| |||||||||| ||||||   |||||||||||||||    
T  52660053 aaaacaattttgcacacacaaccaatggaagtattaggaattgccacgtaaatt-aaaacattaattgatgtagcaattctaaatgtttt 52659965  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 308
Target Start/End: Complemental strand, 32078030 - 32077914
Alignment:
Q  192 agtttaatgatgatgagttgatgatataaaacaattttgcacacgtaatcaatccaaatactatgaattgccacgtaaattaaaaacattaaatgatgtg 291  Q
    ||||||||| ||||||||||| | | |||||||| |||||||||  |||||||| ||| | ||||||||  ||| ||||||||||| | ||| |||| ||    
T  32078030 agtttaatggtgatgagttgacggtttaaaacaactttgcacacaaaatcaatcaaaacattatgaattatcacataaattaaaaagagtaattgatttg 32077931  T
Q  292 ataattctaaatgtttt 308  Q
     ||||| ||||||||||    
T  32077930 gtaattttaaatgtttt 32077914  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 34873582 - 34873525
Alignment:
Q  255 tgaattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttttatt 312  Q
    |||||||||||||||||| |||||||||| ||||||||  ||| ||||||||||||||    
T  34873582 tgaattgccacgtaaatttaaaacattaattgatgtgacgattttaaatgtttttatt 34873525  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 37866979 - 37866914
Alignment:
Q  263 cacgtaaattaaaaacattaaatgatgtgataattctaaatgtttttattaattataggtgcaaaa 328  Q
    ||||||||||||||||||||| | |||||| |||||||||| |||| |||||||||| ||| ||||    
T  37866979 cacgtaaattaaaaacattaattcatgtgacaattctaaatattttgattaattatatgtgtaaaa 37866914  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 308
Target Start/End: Original strand, 20895404 - 20895454
Alignment:
Q  258 attgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttt 308  Q
    |||||||||||||||||||||||||  ||||||||  ||||||||||||||    
T  20895404 attgccacgtaaattaaaaacattatttgatgtgacgattctaaatgtttt 20895454  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 308
Target Start/End: Complemental strand, 20906381 - 20906292
Alignment:
Q  219 aaaacaattttgcacacgtaatcaatccaaatactatgaattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttt 308  Q
    ||||||| |||||| ||  |||||||| ||||| | | ||||||||||||||||||||| ||||  ||| ||||  ||||||||||||||    
T  20906381 aaaacaactttgcatacacaatcaatcaaaatattttaaattgccacgtaaattaaaaatattatttgaagtgacgattctaaatgtttt 20906292  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 308
Target Start/End: Complemental strand, 20919624 - 20919573
Alignment:
Q  257 aattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttt 308  Q
    ||||||||||||||||||||||||||  ||||||||  ||||||||| ||||    
T  20919624 aattgccacgtaaattaaaaacattatttgatgtgacgattctaaatatttt 20919573  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 363
Target Start/End: Complemental strand, 35503617 - 35503511
Alignment:
Q  257 aattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttttattaattataggtgcaaaactattttgaaccgtcaatccaccgtcat 356  Q
    ||||| ||| ||||||||||| ||||| ||||||  | ||| |||||||||| ||| ||| |  |||||||| | ||||| |||||||| ||||| | ||    
T  35503617 aattgtcacataaattaaaaatattaattgatgtattgattttaaatgttttgattgattctgtgtgcaaaattgttttggaccgtcaacccaccataat 35503518  T
Q  357 taaactc 363  Q
    |||||||    
T  35503517 taaactc 35503511  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 363
Target Start/End: Original strand, 26387654 - 26387760
Alignment:
Q  257 aattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttttattaattataggtgcaaaactattttgaaccgtcaatccaccgtcat 356  Q
    ||||||||| |||| |||||||||||| |||||||| |||| |||||||||| |||  || |  |||||||| |||||||||| ||| || ||||  |||    
T  26387654 aattgccacataaactaaaaacattaattgatgtgacaattttaaatgttttgattggttgtgtgtgcaaaattattttgaactgtcgatgcaccaccat 26387753  T
Q  357 taaactc 363  Q
    |||||||    
T  26387754 taaactc 26387760  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 3265329 - 3265376
Alignment:
Q  261 gccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttt 308  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| ||||    
T  3265329 gccacataaattaaaaacattaattgatgtgacaattctaaatatttt 3265376  T

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Target: scaffold0061 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 63671 - 63618
Alignment:
Q  257 aattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgttttta 310  Q
    ||||||||| ||||||||||||||||  |||||||| |||||||||||||||||    
T  63671 aattgccacataaattaaaaacattatttgatgtgacaattctaaatgttttta 63618  T

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Target: scaffold0017 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 134961 - 135014
Alignment:
Q  257 aattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgttttta 310  Q
    ||||||||| ||||||||||||||||  |||||||| |||||||||||||||||    
T  134961 aattgccacataaattaaaaacattatttgatgtgacaattctaaatgttttta 135014  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 37141278 - 37141226
Alignment:
Q  255 tgaattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgttt 307  Q
    ||||||||||| ||||||||||||||||| |||||||  ||||||||||||||    
T  37141278 tgaattgccacataaattaaaaacattaattgatgtggaaattctaaatgttt 37141226  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 345
Target Start/End: Complemental strand, 16427870 - 16427784
Alignment:
Q  259 ttgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttttattaattataggtgcaaaactattttgaaccgtcaa 345  Q
    ||||||||||| ||||||||||||| |||||||   ||||||||| |||| ||| ||| |  || ||||  ||||||||||||||||    
T  16427870 ttgccacgtaacttaaaaacattaattgatgtggcgattctaaatattttgattgattgtgtgtacaaagttattttgaaccgtcaa 16427784  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 351
Target Start/End: Original strand, 27002519 - 27002601
Alignment:
Q  269 aattaaaaacattaaatgatgtgataattctaaatgtttttattaattataggtgcaaaactattttgaaccgtcaatccacc 351  Q
    |||||||| |||| | ||||||| | |||||||||||||| ||| ||| || |||||||||| ||||| || ||||| |||||    
T  27002519 aattaaaatcattcattgatgtggtgattctaaatgttttgattgattgtatgtgcaaaactgttttggactgtcaacccacc 27002601  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 427650 - 427570
Alignment:
Q  256 gaattgccacgtaaattaaaaacattaaatgatgtgataattctaaatgtttttattaattataggtgcaaaactattttg 336  Q
    |||||| ||| || |||||||||||||| |||||||| |||| |||||||||| ||| ||| | ||||||||  |||||||    
T  427650 gaattgtcacatatattaaaaacattaattgatgtgacaattttaaatgttttgatttattttgggtgcaaagatattttg 427570  T

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Target: scaffold0265 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 308
Target Start/End: Original strand, 9812 - 9854
Alignment:
Q  266 gtaaattaaaaacattaaatgatgtgataattctaaatgtttt 308  Q
    |||||||||||||||||  ||||||||| ||||||||||||||    
T  9812 gtaaattaaaaacattatttgatgtgatgattctaaatgtttt 9854  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 21822997 - 21822955
Alignment:
Q  266 gtaaattaaaaacattaaatgatgtgataattctaaatgtttt 308  Q
    |||||||||||||||||  ||||||||| ||||||||||||||    
T  21822997 gtaaattaaaaacattatttgatgtgatgattctaaatgtttt 21822955  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 351
Target Start/End: Complemental strand, 5207658 - 5207574
Alignment:
Q  267 taaattaaaaacattaaatgatgtgataattctaaatgtttttattaattataggtgcaaaactattttgaaccgtcaatccacc 351  Q
    |||||||||| |||||| |||||||  |||||  |||||||| |||  || || | |||||||| ||||| ||||||||||||||    
T  5207658 taaattaaaatcattaattgatgtggcaattcagaatgttttgattggttgtatgcgcaaaactgttttggaccgtcaatccacc 5207574  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 34738783 - 34738712
Alignment:
Q  219 aaaacaattttgcacacgtaatcaatccaaatactatgaattgccacgtaaattaaaaacattaaatgatgtg 291  Q
    ||||||||||||||||   |||||||| ||| | |  |||||| ||||||||||||||||||||| |||||||    
T  34738783 aaaacaattttgcacatacaatcaatc-aaacatttagaattgtcacgtaaattaaaaacattaattgatgtg 34738712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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