View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_high_17 (Length: 416)
Name: NF1894_high_17
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 7558748 - 7558360
Alignment:
| Q |
19 |
gggtagttcattagaaaaatttgttgggaactcaaaatttgtcatggttttgatggaacaagaaaatgaaggagttgtgaataatgttggaagtgaaata |
118 |
Q |
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| T |
7558748 |
gggtagttcattagaaaaatttgttgggaactcaaaatttgtcatggttttgatggaacaagaaaatgaaggagctgtgaataatgttggaagtgaaata |
7558649 |
T |
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| Q |
119 |
agaatgacttgagttaaagacatatttatatagtttgttgaaaggaaaatgaaacgaagaaattatgggccatggtcgttttcatgtgtaacacgttaat |
218 |
Q |
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| T |
7558648 |
aaaatgacttgaattaaagacatatttatatggtttgttcaaaggaaaatgaaacgaagaaattatgggccatggtcgttttcatgtgtaacacgttaat |
7558549 |
T |
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| Q |
219 |
gacaatagtatattgagccatatgacttgctagaatgcatattaattattgacagagtcatagtttctaggatgtcatactacattatttcatactcaat |
318 |
Q |
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| T |
7558548 |
gacaatagtatattgagtcatatgactttctagaatgcatattaattattgacagggtcatagtttctaggatgtcatactacattatttcatactcaat |
7558449 |
T |
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| Q |
319 |
aaaatacgataagattaagatagtagacttctatggtcacaaaattatagatttaatattttgattattttgaaacgattaagaataat |
407 |
Q |
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| T |
7558448 |
aaaatacgataagattaagatagtagacttctatggtcacaaaattatagatttaatattttgattattttgaaacaattaagagtaat |
7558360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 7562878 - 7562675
Alignment:
| Q |
20 |
ggtagttcattagaaaaatttgttgggaactcaaaatttgtcatggttttgatggaacaagaaaatgaaggagttgtgaataatgttggaagtgaaataa |
119 |
Q |
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| T |
7562878 |
ggtaattcattagaaaaatttgtggggaactcaaaatttgtcatggatttgatggaacaagaaaatgaaggagttgtgaataaagttggaagtgaaataa |
7562779 |
T |
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| Q |
120 |
gaatgacttgagttaaagacatatttatata--gtttgttgaaaggaaaatgaaacgaagaaattatgggccatggtcgttttcatgtgtaacacgttaa |
217 |
Q |
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| T |
7562778 |
gaatgacttgagttaaagacatatttatatatggtttgttgaatggaaaatgaaacgaagaaattatggaccatgctcgccgtcatatgtaacacgtaaa |
7562679 |
T |
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| Q |
218 |
tgac |
221 |
Q |
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|||| |
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| T |
7562678 |
tgac |
7562675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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