View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_high_19 (Length: 392)
Name: NF1894_high_19
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 9 - 376
Target Start/End: Original strand, 28667197 - 28667564
Alignment:
| Q |
9 |
caaaggcttttgcaaatggtatctcaggaagtttttgactcaaacaaccaggatcaacaccaaaagctatcatacaaacattgtcaaaagttagtcttaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28667197 |
caaaggcttttgcaaatggtatctcaggaagtttttgactcaaacaaccaggatcaacaccaaaagctatcatacaaacattgtcaaaagttagtcttaa |
28667296 |
T |
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| Q |
109 |
aagaatgtcttgaagatctgtgacagcccttttatcaactgattcatctaaaacaggtaaaagccttgaatgaacaagctcaaacaaagaatcagttgtt |
208 |
Q |
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| T |
28667297 |
aagaatgtcttgaagatctgtgacagcccttttatcaactgattcatctaaaacaggtaaaagccttgaatgaacaagctcaaacaaagaatcagttgtt |
28667396 |
T |
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| Q |
209 |
aaatttctgaacttggtcgaatgaaactcgatgctcgctgtttttctttgtttttgccatatttcatcatctgcactgaatataccatctccaagtaagt |
308 |
Q |
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| T |
28667397 |
aaatttctgaacttggtcgaatgaaactcgatgctcgctgtttttctttgtttttgccatatttcatcatctgcactgaatataccatctccaagtaagt |
28667496 |
T |
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| Q |
309 |
cccttaccatgtttctaaagtaagttcctttaggaaagttgatgaatttggttttgagaaggtgttcg |
376 |
Q |
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| T |
28667497 |
cccttaccatgtttctaaagtaagttcctttaggaaagttgatgaatttggttttgagaaggtgttcg |
28667564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 49 - 306
Target Start/End: Complemental strand, 13887304 - 13887047
Alignment:
| Q |
49 |
caaacaaccaggatcaacaccaaaagctatcatacaaacattgtcaaaagttagtcttaaaagaatgtcttgaagatctgtgacagcccttttat-caac |
147 |
Q |
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| T |
13887304 |
caaacaagaaggatcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatcgatggaaaccgatttcttcaac |
13887205 |
T |
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| Q |
148 |
tgattcatctaaaacaggtaaaagccttgaatgaacaagctcaaacaaagaatcagttgttaaatttctgaacttggtcgaatgaaactcgatgctcgct |
247 |
Q |
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||| |||||| ||||||| ||||| | |||||||||||||| |||||||||||||| || || ||||| || |||||||||||||| |||||| |
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| T |
13887204 |
-gatgaatctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcctaaactttgttgaatgaaactcgatactcgct |
13887106 |
T |
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| Q |
248 |
gtttttctttgtttttgccatatttcatcatctgcactgaatataccatctccaagtaa |
306 |
Q |
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| T |
13887105 |
gttttcctttgtttctgccatgtttcgttatctacagcgaaaataccgtctccaagtaa |
13887047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 13897901 - 13897978
Alignment:
| Q |
50 |
aaacaaccaggatcaacaccaaaagctatcatacaaacattgtcaaaagttagtcttaaaagaatgtcttgaagatct |
127 |
Q |
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| T |
13897901 |
aaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatct |
13897978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 7295907 - 7295947
Alignment:
| Q |
51 |
aacaaccaggatcaacaccaaaagctatcatacaaacattg |
91 |
Q |
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| T |
7295907 |
aacaaccaggatcaacaccaaaagatatcatgcaaacattg |
7295947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 275
Target Start/End: Original strand, 13898055 - 13898126
Alignment:
| Q |
204 |
ttgttaaatttctgaacttggtcgaatgaaactcgatgctcgctgtttttctttgtttttgccatatttcat |
275 |
Q |
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| T |
13898055 |
ttgttaacttcctaaaatttgtcgaatgaaactcgatactcgctattttcctttgtttctgccatgtttcat |
13898126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 53 - 306
Target Start/End: Original strand, 1034961 - 1035214
Alignment:
| Q |
53 |
caaccaggatcaacaccaaaagctatcatacaaacattgtcaaaagttagtcttaaaagaatgtcttgaagatctgtgacagcccttttatcaactgatt |
152 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| | | ||| |||||||||||| || || | |||| | | |||| |
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| T |
1034961 |
caaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcagcaaaatatcttgaagatctatggcaacatttttcttcaatgata |
1035060 |
T |
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| Q |
153 |
catctaaaacaggtaaaagccttgaatgaacaagctcaaacaaagaatcagttgttaaatttctgaacttggtcgaatgaaactcgatgctcgctgtttt |
252 |
Q |
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| T |
1035061 |
attctaagactggtatgagcctattgttcacaagctcaaaaattgactcatttgttaactttctaaaatttgtcgaatgaaactcgatactagctatttt |
1035160 |
T |
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| Q |
253 |
tctttgtttttgccatatttcatcatctgcactgaatataccatctccaagtaa |
306 |
Q |
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|||||||| |||||| |||||| || ||| |||| ||||| ||||| ||||| |
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| T |
1035161 |
cctttgtttctgccatgtttcattgtcagcagtgaaaataccgtctccgagtaa |
1035214 |
T |
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