View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_high_2 (Length: 807)
Name: NF1894_high_2
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_high_2 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 653; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 1 - 762
Target Start/End: Original strand, 5310058 - 5310800
Alignment:
| Q |
1 |
caagaacttaatggtttaacttgaatatgtccctcgtatcttggatgaagttaaatattttcatacataacttgtgtaagaaacatttttatgattgtgt |
100 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5310058 |
caagaacttgatggtttaacttgaatatgtccctcgtatcttggatgaagttaaatattttcatacataacttgtgtaagaaacatttttatgattgtgt |
5310157 |
T |
|
| Q |
101 |
ctaattattcttcaatgatatcttaagtactattcagaaacttaatgattatctcatatgaaatacttaaggagaagataaaaaatgaaagatagtatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5310158 |
ctaattattcttcaatgatatcttaagtactattcagaaacttaatgattgtctcatatgaaatacttaaggagaagataaaaaatgaaagatagtatta |
5310257 |
T |
|
| Q |
201 |
agttgggttctcataactcaaatggagtgttcaaattcagttttgaatgttaagacactatcttatggaggataagagagtgttataacatatgcttcct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5310258 |
agttgggttctcataactcaaatggagtgttcaaattcagttttgaatgttaagacactatcttatggaggataagagagtgttataacatatgcttcct |
5310357 |
T |
|
| Q |
301 |
tatatagctagaaaactcagtccagtttatatgatctatatgtttgagtcatacttctgttgtttttgagtctaaaacttctgtttttaatcctaacatc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5310358 |
tatatagctagaaaactcagtccagtttatatgatctatatgtttgagtcatacttctgttgtttttgagtctaaaacttctgtttttaatcctaacatc |
5310457 |
T |
|
| Q |
401 |
ttccaatgaaattttttaagtaacttattactcaaaggaggagagatgttaagaacaaaactaatggttcatctcatgataaaatcaactttttacatac |
500 |
Q |
| |
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|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5310458 |
ttccaatgaaatttttgaagtaacttattac------------------taagaacaaaactaatggttcatctcatgataaaatcaactttttacatac |
5310539 |
T |
|
| Q |
501 |
aatctgaaaggttgaaaaattgatcatgataatcatgagaaagtatttcaacttatttttaaaaatttaaatgtagaagtttttgtccttaacttcaagg |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5310540 |
aatctgaaaggttgaaaaattgatcatgataatcatgagaaagtatttcaacttatttttaaaaatttaaatgtagaagtttttgtccttaacttcaagg |
5310639 |
T |
|
| Q |
601 |
accttctttgtatgttattttttcaatatttgnnnnnnntccttatgagttaattctcaacaactagctttgtatagctaagtactctactatatatagc |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5310640 |
accttctttgtatgttattttttcaatatttg-aaaaaatcctgatgagttaattctcaacaactagctttgtatagctaagtactctactatatatagc |
5310738 |
T |
|
| Q |
701 |
tcactaagagaatatggtatatcacgtggaagattgctccttcagctcaacccccattggtt |
762 |
Q |
| |
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||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5310739 |
tcactaagagaatttggtatgtcacgtggaagattgctccttcagctcaacccccattggtt |
5310800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 360 - 623
Target Start/End: Complemental strand, 8152452 - 8152191
Alignment:
| Q |
360 |
ttgtttttgagtctaaaacttctgtttttaatcctaacatcttccaatgaaattttttaagtaacttattactcaaaggaggagagatgttaagaacaaa |
459 |
Q |
| |
|
|||||||| ||| || ||||| ||||||| || |||| |||||||||| ||| | | |||||| || ||||||||| ||| |||| ||||||||||| | |
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| T |
8152452 |
ttgttttttagtttataacttttgttttttattctaatatcttccaataaaaaatgt-aagtaatttgttactcaaaagagaagaggtgttaagaacata |
8152354 |
T |
|
| Q |
460 |
actaatggttcatctcatgataaaatcaactttttacatacaatctgaaaggttgaaaaattgatcatgataatcatgagaaagtatttcaacttatttt |
559 |
Q |
| |
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|||| ||||| ||| ||| | ||| | |||| |||||||||| ||||||||||| |||||||||| |||||| |||||||||||||||||||||| |
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| T |
8152353 |
ttaaatg-ttcatatcaggatgatatctagttttgacatacaatcaaaaaggttgaaatattgatcatgggaatcattagaaagtatttcaacttatttt |
8152255 |
T |
|
| Q |
560 |
taaaaatttaaatgtagaagtttttgtccttaacttcaaggaccttctttgtatgttatttttt |
623 |
Q |
| |
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|||||| ||| |||||| |||||||||| ||||||| |||||||||||| ||| ||||||| |
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|
| T |
8152254 |
caaaaatgaaaaggtagaaatttttgtcctaaacttcattgaccttctttgtgtgtaatttttt |
8152191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 230 - 310
Target Start/End: Complemental strand, 8152587 - 8152507
Alignment:
| Q |
230 |
ttcaaattcagttttgaatgttaagacactatcttatggaggataagagagtgttataacatatgcttccttatatagcta |
310 |
Q |
| |
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|||||||| ||||||| ||||| | ||||||||||||| ||||||| ||||| |||||||||| ||| |||||||||| |
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| T |
8152587 |
ttcaaatttagttttggatgttcgaatactatcttatggatgataagaaagtgtcataacatatgattctctatatagcta |
8152507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 9480954 - 9480910
Alignment:
| Q |
95 |
ttgtgtctaattattcttcaatgatatcttaagtactattcagaa |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
9480954 |
ttgtgtctaattattcttcaatgatatcttagatactatttagaa |
9480910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 415 - 458
Target Start/End: Original strand, 43948771 - 43948814
Alignment:
| Q |
415 |
tttaagtaacttattactcaaaggaggagagatgttaagaacaa |
458 |
Q |
| |
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||||||| | |||||||||||| ||||||||||||||||||||| |
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| T |
43948771 |
tttaagtgatttattactcaaaagaggagagatgttaagaacaa |
43948814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 506 - 564
Target Start/End: Complemental strand, 34546559 - 34546501
Alignment:
| Q |
506 |
gaaaggttgaaaaattgatcatgataatcatgagaaagtatttcaacttatttttaaaa |
564 |
Q |
| |
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|||| ||||||| |||||||||| ||||||||||||| ||||||| ||||||| |||| |
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| T |
34546559 |
gaaatgttgaaagattgatcatggtaatcatgagaaattatttcaggttattttcaaaa |
34546501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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