View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_high_27 (Length: 345)
Name: NF1894_high_27
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 29146225 - 29145907
Alignment:
| Q |
18 |
cttgtgacttgtgacactatgtgcattcnnnnnnn-caagaaacaaaaacaaaatactaatacatattagaatcaagcatgaataaaaaatgcatgtaaa |
116 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29146225 |
cttgtgacttgtgacactatgtgcattcttttttttcaagaaacaaaaacaaaatactattacatattagaatcaagcatgaataaaaaatgcatgtaaa |
29146126 |
T |
|
| Q |
117 |
tttcatgattttactctaccgccaccccctaactgctttcaaagacagagtaacccttgctaaaatctgcatttaaaaattacaataattaaattggtaa |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29146125 |
tttcatgattttactctaccaccaccccctaactgctttcaaagacagagtaacccttgctaaaatctgcatttaaaaattacaataattaaattgataa |
29146026 |
T |
|
| Q |
217 |
attaatattaaagggtacatcaatgccataaatattcaactttcctcctaattagatgaatttggtttctttggtgtcagatccaagtgagggccaaaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29146025 |
attaatattaaagggtacatcaatgccataaatattcaactttcttcctaattagatgaatttggtttctttggtgtcagatccaagtgatggccaaaat |
29145926 |
T |
|
| Q |
317 |
tgtgcattcttcacctttg |
335 |
Q |
| |
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||||||||||||||||||| |
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| T |
29145925 |
tgtgcattcttcacctttg |
29145907 |
T |
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