View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1894_high_30 (Length: 320)
Name: NF1894_high_30
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_high_30 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 5316351 - 5316048
Alignment:
| Q |
1 |
acaaaaagtcacaaaataaaattgg-caatattataatctgcaagaagagcacatatata-ttttttgaacaatatattatattactacatttaaaatat |
98 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5316351 |
acaaaaagtcacaaaataaaattgtacaatattataatctgcaagaagagcacatattttgttttttgaacaatatattatattactacatttaaaatat |
5316252 |
T |
|
| Q |
99 |
aattcattagttacaaacatcttcatcgtctttaacatgttaacgccattttcttcttaattataaatgatattttgtcaaataattaaagagctattgt |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5316251 |
aattcattagttacaaacatcttcatcgtctctaacatgttaacaccattttcttcttaattataaatgatattttgtcaaataattaaagagctattgt |
5316152 |
T |
|
| Q |
199 |
tagaatatacagctaatttgttataaaaattatgaaactaacacaattgtattactattttaatacgacggtatacaagttgaaacattagatgaaattc |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5316151 |
tagaatatacagctaatttgttataaaaattatgaaactaacacaattgtattactattttaatacgacggtatacaagttgaaacattagatgaaattc |
5316052 |
T |
|
| Q |
299 |
catc |
302 |
Q |
| |
|
|||| |
|
|
| T |
5316051 |
catc |
5316048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University