View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_high_32 (Length: 320)
Name: NF1894_high_32
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 305
Target Start/End: Original strand, 39330179 - 39330468
Alignment:
| Q |
12 |
tactaagtcatttgctaatttagttggaaattaaagctgcaattgtatcatgtgatgtgaggaccttgtttaatttgtagtatacttatctgacattata |
111 |
Q |
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| T |
39330179 |
tactatgtcatttgttaatttagttggaaa-----gctgcaattgtattatgtgatgtgaggaccttgtttaatttgtagtatacttatctgacattata |
39330273 |
T |
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| Q |
112 |
aatgttactagccaaaaaattattacattattaatatgttttgatgcttaggtataaaaatttgagccaaaggcccag-nnnnnnnntagaagccagaga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39330274 |
aatgttactagccaaaaaattattacattattaatatgttttgatgcttaggtataaaaatttgagccaaaggcccagaaaaaaaaatagaagccagaga |
39330373 |
T |
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| Q |
211 |
gagaaaggaactaataattaataaactttgttactctatagaatatcatagattatgccataaaataaaacagtactacctattatagtaatata |
305 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39330374 |
gagaaaggaactaataattaataaaccttgttactctatagaatatcatagattatgccataaaataaaacagtactacctattatagtaatata |
39330468 |
T |
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