View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_high_33 (Length: 318)
Name: NF1894_high_33
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 6461717 - 6461841
Alignment:
| Q |
17 |
tcatttttatt-gtctaatgcaatatatctctaatttacttagttgatatccatgaagcaatcataaaatttatcttgtagtattctctttgctgtacta |
115 |
Q |
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| T |
6461717 |
tcatttttatttgtctaatgcaatatatct--aatttacttagttgatatccatgaagcaatcataaaatttatctt---ttattctctttgctgtacta |
6461811 |
T |
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| Q |
116 |
gttactggaatttgggggcttctagcactt |
145 |
Q |
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| T |
6461812 |
gttactggaatttgggggcttctagcactt |
6461841 |
T |
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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 6461850 - 6461912
Alignment:
| Q |
182 |
ttatcatatgcaaatgagttacacaggcgattataaattttaattaacttcttgagcaatcgtca |
246 |
Q |
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| T |
6461850 |
ttatcatatgcaaatgagttaca--ggcgagcataaattttaagtaacttcttgagtaatcgtca |
6461912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 43675712 - 43675813
Alignment:
| Q |
102 |
tctttgctgtactagttactggaatttgggggcttctagcacttcgtgtgaccgatgattccattctccctttccatgacttatcatatgcaaatgagtt |
201 |
Q |
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| T |
43675712 |
tctttgttgtatcagttactggaatttggggccttctagcccttcgcctggccgatgattccattcttcctttcaattacctatcatacgcaaatgagtt |
43675811 |
T |
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| Q |
202 |
ac |
203 |
Q |
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|| |
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| T |
43675812 |
ac |
43675813 |
T |
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