View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_high_34 (Length: 314)
Name: NF1894_high_34
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 2677963 - 2678271
Alignment:
| Q |
1 |
ccaaggaaagaacatcacatttagaagtgggatttggaatggcgttcgctttaattccgctgattggacatcgtttataggagttacagccttcaagcca |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2677963 |
ccaaggaaagaacatcacgtttagaagtgggatttggaatggcgttcgttttaattccgatgattggacatcgtttataggagttacagccttcaagcca |
2678062 |
T |
|
| Q |
101 |
caactttcagtaaccaagaatgaggtagtgtattgggatgaacctggagatagattgtcaaggtttatgatgagggatgatggattgttggaaagatata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2678063 |
caactttcagtaaccaagaatgaggtagtgtattgggatgaacctggagatagattgtcaaggtttatgatgagggatgatggattgttggaaagatata |
2678162 |
T |
|
| Q |
201 |
tatgggacagcagtatcgttaagtggactaaaatgtacgaggcaagaaaagatttatgtgataattatggagcatgtgggataaatggtgtttgtaatat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2678163 |
tatgggacagcagtatcgttaagtggactaaaatgtacgaggcgagaaaagatttatgtgataattatggagcatgtgggataaatggtgtttgtaatat |
2678262 |
T |
|
| Q |
301 |
tgatgatgt |
309 |
Q |
| |
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||||||||| |
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| T |
2678263 |
tgatgatgt |
2678271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 29 - 309
Target Start/End: Complemental strand, 3052613 - 3052336
Alignment:
| Q |
29 |
gggatttggaatggcgttcgcttt-aattccgctgattggacatcgtttataggagttacagccttcaagccacaactttcagtaaccaagaatgaggta |
127 |
Q |
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||||||||||||||||| |||||| ||||||| |||||||||||| |||| |||| | ||| | | ||||||||||||||||||||||||||||||| |
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| T |
3052613 |
gggatttggaatggcgt-cgcttttaattccgatgattggacatcttttacaggaatg---gcccttaggccacaactttcagtaaccaagaatgaggta |
3052518 |
T |
|
| Q |
128 |
gtgtattgggatgaacctggagatagattgtcaaggtttatgatgagggatgatggattgttggaaagatatatatgggacagcagtatcgttaagtgga |
227 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3052517 |
gtgaattgggatgaacctggagatagattgtcaaggtttatgattagggatgatggattgttggaaagatatatatgggacagcagtatcgttaagtgga |
3052418 |
T |
|
| Q |
228 |
ctaaaatgtacgaggcaagaaaagatttatgtgataattatggagcatgtgggataaatggtgtttgtaatattgatgatgt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3052417 |
ctaaaatgtacgaggcaagaaaagatttatgtgataattatggagcatgtgggataaatggtgtttgtaatattgatgatgt |
3052336 |
T |
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