View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1894_high_35 (Length: 310)

Name: NF1894_high_35
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1894_high_35
NF1894_high_35
[»] chr3 (1 HSPs)
chr3 (3-295)||(10463953-10464245)


Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 3 - 295
Target Start/End: Original strand, 10463953 - 10464245
Alignment:
Q  3 ggtccacctggccaaaacctatacggaaacttcagaaagatcttggtgtacaccattacatcacacttctcaatggcttccaatttccacctctgtttca 102  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10463953 ggtccacatggccaaaacctatacggaaacttcagaaagatcttggtgtacaccattacatcacacttctcaatggcttccaatttccacctctgtttca 10464052  T
Q  103 ttattttattcatcatggaattattgaatcagacaagtatacatcgcttaacaagacaaaatatattaactaataataacatcactgaagggatgattat 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10464053 ttattttattcatcatggaattattgaatcagacaagtatacatcgcttaacaagacaaaatatattaactaataataacatcactgaagggatgattat 10464152  T
Q  203 acgactaaaacacaaataagtttcatggaaaagacaaataacttcaatgatatatcataatcccataattgtttaatttgatgacctcatatc 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10464153 acgactaaaacacaaataagtttcatggaaaagacaaataacttcaatgatatatcataatcccataattgtttaatttgatgacctcatatc 10464245  T

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