View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1894_high_41 (Length: 284)
Name: NF1894_high_41
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_high_41 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 29879046 - 29878777
Alignment:
| Q |
1 |
acaattttgttggtgaagtaaaccaatgtggcagatctatcatcgaggtcaattatttgattctttttatgccaaattgcattattttttatatttggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29879046 |
acaattttgttggtgaagtaaaccaatgtggcagatctatcatcgaggtcaattatttgattctttttatgccaaattgcattattttttatatttggtt |
29878947 |
T |
|
| Q |
101 |
tccttagataaactttgttcaatacattctgacacattaatgatgagttttcagtaagaaatagttataaatcacacatgttgagataactaacttataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29878946 |
tccttagataaactttgttcaatacattctgacacattaatgatgagttttcagtaagaaatagttataaatcacacatgttgagataactaacttataa |
29878847 |
T |
|
| Q |
201 |
ctcacatcccgtttgataaagaaacctgaagcatcaaattaggtgatagggaaaccatgcattgtatctg |
270 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29878846 |
ctaacatcccgtttgataaagaaacctgaagcatcaaattaggtgatagggaaaccatgcattgtatctg |
29878777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University