View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1894_high_43 (Length: 273)
Name: NF1894_high_43
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_high_43 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 51192437 - 51192290
Alignment:
| Q |
20 |
aacatcgtctatgacactgctaatgtcaaaagcttaggagttagaatgccgacacaaataaatttatacttgtcatgattaaataatatataaacatatt |
119 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51192437 |
aacatcgtctatgacactactaatgtcaaaagcttagga-------tgccgacacaaatacatttatacttgtcatgattaaataatatataaacatatt |
51192345 |
T |
|
| Q |
120 |
ttacaaattatgagtgaaaatttacatatgcatgtaagttgtgcaatttatttca |
174 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
51192344 |
ttacaaatcatgagtgaaaatttacatatgcatgtaaattgtgcaatttatttca |
51192290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 51212019 - 51211937
Alignment:
| Q |
179 |
tttccacaacgagtaagaatgactagaaccttagccaatgtctgggtctgaattatatttatgcacctcctaaacacaggttc |
261 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51212019 |
tttccacaatgagtaagaatgactagaaccttagccaatgtctgggtctgaattatatttatgcacctcctaaacacaggttc |
51211937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University