View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_high_48 (Length: 256)
Name: NF1894_high_48
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_high_48 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 2429170 - 2428941
Alignment:
| Q |
11 |
aaaatggaaattgaataacagggaagaataacacgtagcagcagcaaccaacaattcatatgcgcagcaaattaaagaggttagcacgacacagtttaaa |
110 |
Q |
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| T |
2429170 |
aaaatggaaattgaataacagggaagaataacacgtagcagcagcaaccaacaattcatatgcgcagcaaattaaagaggttagcacgacacagtttaaa |
2429071 |
T |
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| Q |
111 |
ttctagaatgggagttcactttcgaacaaccatgcagcaagcacgccaccaaggattaatttcacaaggagatttaaataaatggtagtagtaataacaa |
210 |
Q |
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| T |
2429070 |
ttctagaatgggagttcactttcgaacaaccatgcagcaagcacgccaccaaggattaatttcacaaggagatttaaataaatggtagtagtaataacaa |
2428971 |
T |
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| Q |
211 |
acagaatttaccttgcctaactcatgcaat |
240 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2428970 |
acagaatttaccttgcctaactcatgcaat |
2428941 |
T |
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