View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_high_50 (Length: 252)
Name: NF1894_high_50
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 42825424 - 42825193
Alignment:
| Q |
5 |
gagagagaagaaggtgttgattctaataattcaagagaaattaatagtattcatttgaaacaacaacactttgtgctagtacatggcataggtggtggag |
104 |
Q |
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| T |
42825424 |
gagatagaagatggtgttgattctaataattcaagagaaattaatagtattcatttgaaacaacaacactttgtgctagtacatggcataggtggtggag |
42825325 |
T |
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| Q |
105 |
gttggtgctggtacaaaattaagtgccttatggagaattctgggtacaaagtctcatgcatagaccttaaaagtagtggaattgatcaatctgatgctga |
204 |
Q |
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| T |
42825324 |
gttggtgctggtacaaaattaagtgccttatggagaattctgggtacaaagtctcatgcatagaccttaaaagtagtggaattgatcaatctgatgctga |
42825225 |
T |
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| Q |
205 |
ttctattctaacttttgatgattataataaac |
236 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
42825224 |
ttctattctaacttttgatgattataataaac |
42825193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 71 - 232
Target Start/End: Original strand, 28794771 - 28794932
Alignment:
| Q |
71 |
cactttgtgctagtacatggcataggtggtggaggttggtgctggtacaaaattaagtgccttatggagaattctgggtacaaagtctcatgcatagacc |
170 |
Q |
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| T |
28794771 |
cactttgtgttagtacatggcataggtggaggaggttggtgctggtacaaaatcaggtgccttatggagaattctggctacaaagtctcttgcatagacc |
28794870 |
T |
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| Q |
171 |
ttaaaagtagtggaattgatcaatctgatgctgattctattctaacttttgatgattataat |
232 |
Q |
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| T |
28794871 |
tcaaaagtgcaggaattaatcaatctgatgctgattctgttctttcttttgatgattataat |
28794932 |
T |
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