View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1894_high_53 (Length: 250)

Name: NF1894_high_53
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1894_high_53
NF1894_high_53
[»] chr6 (2 HSPs)
chr6 (1-240)||(7557970-7558207)
chr6 (89-158)||(31559234-31559304)
[»] chr5 (4 HSPs)
chr5 (77-158)||(33818905-33818986)
chr5 (78-158)||(33737404-33737484)
chr5 (77-153)||(10473257-10473333)
chr5 (81-158)||(8462024-8462102)
[»] chr2 (3 HSPs)
chr2 (77-158)||(36401166-36401248)
chr2 (85-122)||(6406909-6406946)
chr2 (82-120)||(31467702-31467740)
[»] chr8 (1 HSPs)
chr8 (77-160)||(35809819-35809903)
[»] chr1 (1 HSPs)
chr1 (86-157)||(3771561-3771632)
[»] chr7 (2 HSPs)
chr7 (77-158)||(18310996-18311078)
chr7 (81-158)||(43380511-43380589)
[»] chr4 (1 HSPs)
chr4 (86-122)||(9031287-9031323)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 7558207 - 7557970
Alignment:
Q  1 ttgaattcttt-ggccgtttaaaaatatatattgtaagaatcaaatgtataactaatatttcctccgtctgagggatggacggatctaggaatatatttc 99  Q
    ||||||||||| |||||||||||||||||||||  |||||| |||||||||||||||||||||||||| | ||    ||||||||||||||||||||||     
T  7558207 ttgaattcttttggccgtttaaaaatatatattaaaagaataaaatgtataactaatatttcctccgtttcag----ggacggatctaggaatatatttt 7558112  T
Q  100 aagtgtggctaaataagtagcaatcgaaaaaataaagatttttaatattttatactttaacggtggattttttagtcactatttgcg-ctctaaacgtat 198  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||| || ||||||||||||    
T  7558111 aagtgtggctaaataagtagcagttgaaaaaataaagatttttaatattttatactttaacgacggattttttagtcattatttacgtctctaaacgtat 7558012  T
Q  199 tagagaccgatttttactcagcaactagagtttcagtctctg 240  Q
    |||||||| ||||||| ||| |||||||||||||||||||||    
T  7558011 tagagaccaatttttattcatcaactagagtttcagtctctg 7557970  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 31559304 - 31559234
Alignment:
Q  89 gaatatatttcaagtgtggctaaataagtagcaatcgaaaaaataaa-gatttttaatattttatacttta 158  Q
    ||||| |||| |||||||| ||||||||||||||  |||| ||| |  |||||||||||||||||||||||    
T  31559304 gaatacattttaagtgtggttaaataagtagcaactgaaataatgatcgatttttaatattttatacttta 31559234  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 33818905 - 33818986
Alignment:
Q  77 ggacggatctaggaatatatttcaagtgtggctaaataagtagcaatcgaaaaaataaagatttttaatattttatacttta 158  Q
    ||||| ||||||||||| |||||||||||||||||||||| ||||| |||||||| |  |||||||||||||||||||||||    
T  33818905 ggacgaatctaggaatacatttcaagtgtggctaaataagaagcaaccgaaaaaacactgatttttaatattttatacttta 33818986  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 33737484 - 33737404
Alignment:
Q  78 gacggatctaggaatatatttcaagtgtggctaaataagtagcaatcgaaaaaataaagatttttaatattttatacttta 158  Q
    |||||||||||| ||| |||| ||||||||| |||||||||||||||||| ||  |  |||||||||||||||||||||||    
T  33737484 gacggatctaggcatacattttaagtgtggcaaaataagtagcaatcgaagaatgatcgatttttaatattttatacttta 33737404  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 10473333 - 10473257
Alignment:
Q  77 ggacggatctaggaatatatttcaagtgtggctaaataagtagcaatcgaaaaaataaagatttttaatattttata 153  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||||| | |||||| |   |||||||||||||||||    
T  10473333 ggacggatctatgaatacattttaagtgtggctaaataagtagcaaccaaaaaaagattaatttttaatattttata 10473257  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 8462024 - 8462102
Alignment:
Q  81 ggatctaggaatatatttcaagtgtggctaaataagtagcaatcgaaaaaat-aaagatttttaatattttatacttta 158  Q
    |||||||  |||| ||||||||||||| ||||||||||||||  |||| ||| |  |||||||||||||||||||||||    
T  8462024 ggatctataaatacatttcaagtgtgggtaaataagtagcaactgaaataatgatcgatttttaatattttatacttta 8462102  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 36401166 - 36401248
Alignment:
Q  77 ggacggatctaggaatatatttcaagtgtggctaaataagtagcaatcgaaaaaat-aaagatttttaatattttatacttta 158  Q
    ||||||||||| ||||| ||||||||||||||||||||||||| ||  |||| ||| |  |||||||||||||||||||||||    
T  36401166 ggacggatctaagaatacatttcaagtgtggctaaataagtaggaactgaaacaatgattgatttttaatattttatacttta 36401248  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 6406909 - 6406946
Alignment:
Q  85 ctaggaatatatttcaagtgtggctaaataagtagcaa 122  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  6406909 ctaggaatacatttcaagtgtggctaaataagtagcaa 6406946  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 120
Target Start/End: Complemental strand, 31467740 - 31467702
Alignment:
Q  82 gatctaggaatatatttcaagtgtggctaaataagtagc 120  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  31467740 gatctagaaatacatttcaagtgtggctaaataagtagc 31467702  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 160
Target Start/End: Original strand, 35809819 - 35809903
Alignment:
Q  77 ggacggatctaggaatatatttcaagtgtggctaaataagtagcaatcgaaa-aaataaagatttttaatattttatactttaac 160  Q
    ||||||||||||||||  ||||||||||||||||||||| ||| |||| ||| ||  |  |||||||||||||||||||||||||    
T  35809819 ggacggatctaggaatgcatttcaagtgtggctaaataaatagaaatcaaaataacgatcgatttttaatattttatactttaac 35809903  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 3771561 - 3771632
Alignment:
Q  86 taggaatatatttcaagtgtggctaaataagtagcaatcgaaaaaataaagatttttaatattttatacttt 157  Q
    |||||||| |||||| ||||||||||||||||||||||| ||| ||| |    |||||||||||||||||||    
T  3771561 taggaatacatttcaggtgtggctaaataagtagcaatcaaaataatgattgattttaatattttatacttt 3771632  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 18311078 - 18310996
Alignment:
Q  77 ggacggatctaggaatatatttcaagtgtggctaaataagtagcaatcgaaa-aaataaagatttttaatattttatacttta 158  Q
    |||||||| |||||||| |||| ||||||||||||||||||||  | ||||| || ||  |||||||||||||||||| ||||    
T  18311078 ggacggatttaggaatacattttaagtgtggctaaataagtagttaccgaaataattatcgatttttaatattttatatttta 18310996  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 43380511 - 43380589
Alignment:
Q  81 ggatctaggaatatatttcaagtgtggctaaataagtagcaatcgaaaaaat-aaagatttttaatattttatacttta 158  Q
    ||||||||||||| ||||||||| || |||||||||||||||  |||| ||| |  ||| |||||||||||||||||||    
T  43380511 ggatctaggaatacatttcaagtatgactaaataagtagcaactgaaataatgatcgatctttaatattttatacttta 43380589  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 9031287 - 9031323
Alignment:
Q  86 taggaatatatttcaagtgtggctaaataagtagcaa 122  Q
    ||||||||||||| | |||||||||||||||||||||    
T  9031287 taggaatatattttatgtgtggctaaataagtagcaa 9031323  T

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