View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1894_high_58 (Length: 242)
Name: NF1894_high_58
Description: NF1894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1894_high_58 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 42834633 - 42834407
Alignment:
| Q |
16 |
gttttaccaaatttgtaatgttggagacatactctggaatatactctggaatatgagtactcaatttagcagtttgtttttgcaactcctcgtctttcaa |
115 |
Q |
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| T |
42834633 |
gttttaccaaatttgtaatgttggagacatactctggaatatactctggaatatgagtactcaatttagcagtttgtttttgcaactcctcgtctttcaa |
42834534 |
T |
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| Q |
116 |
attaaattcttctaaaagctctttttgtttcctcaactctttcttttttagattcaattcttcgctcacattatctagttgaccctcaccattcccaact |
215 |
Q |
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| T |
42834533 |
attaaattcttctaaaagctctttttgtttcctcaactctttcttttttagattcaattcttcgctcacattatctagttgaccctcaccattcccaact |
42834434 |
T |
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| Q |
216 |
tggaccttcaactttatattctcttct |
242 |
Q |
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| T |
42834433 |
tggaccttcaactttatattctcttct |
42834407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 42819461 - 42819413
Alignment:
| Q |
58 |
actctggaatatgagtactcaatttagcagtttgtttttgcaactcctc |
106 |
Q |
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| T |
42819461 |
actctgaaatatgagtatccaattcagcagtttgtttttgcaactcctc |
42819413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 42843369 - 42843301
Alignment:
| Q |
122 |
ttcttctaaaagctctttttgtttcctcaactctttcttttttagattcaattcttcgctcacattatc |
190 |
Q |
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| T |
42843369 |
ttcttttaaaagctccttttgtttattcaactccttctctttcaggttcaattctttgctcacattatc |
42843301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 42843178 - 42843132
Alignment:
| Q |
196 |
gaccctcaccattcccaacttggaccttcaactttatattctcttct |
242 |
Q |
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| T |
42843178 |
gaccctcactactctcaacttgaaccttcaactttatattctcttct |
42843132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 12627892 - 12627792
Alignment:
| Q |
133 |
gctctttttgtttcctcaactctttcttttttagattcaattcttcgctcacattatctagttgaccctcaccattcccaacttggaccttcaactttat |
232 |
Q |
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| T |
12627892 |
gctcttttagtttacgcacctcttcctctttcagcttcagttcttcgcgcacattatcaagctcaccctcactattctcaatttcaaccttcaactttat |
12627793 |
T |
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| Q |
233 |
a |
233 |
Q |
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| T |
12627792 |
a |
12627792 |
T |
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